Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PUN50_RS15995 Genome accession   NZ_CP117988
Coordinates   3472050..3472775 (+) Length   241 a.a.
NCBI ID   WP_274290656.1    Uniprot ID   A0AAQ2XWY4
Organism   Vibrio campbellii strain 20220413_1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3467050..3477775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS15980 (PUN50_15980) - 3468175..3470496 (+) 2322 WP_274290655.1 Tex family protein -
  PUN50_RS15985 (PUN50_15985) - 3470601..3471065 (-) 465 WP_005430182.1 hypothetical protein -
  PUN50_RS15990 (PUN50_15990) bioH 3471201..3471965 (-) 765 WP_005529108.1 pimeloyl-ACP methyl ester esterase BioH -
  PUN50_RS15995 (PUN50_15995) comF 3472050..3472775 (+) 726 WP_274290656.1 ComF family protein Machinery gene
  PUN50_RS16000 (PUN50_16000) nfuA 3472873..3473457 (+) 585 WP_005430072.1 Fe-S biogenesis protein NfuA -
  PUN50_RS16005 (PUN50_16005) nudE 3473633..3474199 (+) 567 WP_005430103.1 ADP compounds hydrolase NudE -
  PUN50_RS16010 (PUN50_16010) cysQ 3474247..3475074 (+) 828 WP_005430183.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PUN50_RS16015 (PUN50_16015) - 3475365..3476126 (-) 762 WP_005430117.1 type II secretion system protein N -
  PUN50_RS16020 (PUN50_16020) - 3476128..3476619 (-) 492 WP_005430160.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27643.78 Da        Isoelectric Point: 7.9917

>NTDB_id=788978 PUN50_RS15995 WP_274290656.1 3472050..3472775(+) (comF) [Vibrio campbellii strain 20220413_1]
MLSHQWQNIMHRLLSSQCGLCRFPIPHRQTPDLMRWCDSCFDHLTPIVRCVRCGLKMTEEESQAATECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEVWHVGALTQLLAERVEQPAPVITSVPVHWQRFLKRGFNQSHILAKHLAHHLDVRYEN
KVFKRVKNVQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=788978 PUN50_RS15995 WP_274290656.1 3472050..3472775(+) (comF) [Vibrio campbellii strain 20220413_1]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCCTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACGCCCGACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATTGTGCGCTGCGTACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAAGCAGCCACAGAGTGTGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTGGGGGATTATGACTTCCCGCTCTCTCAACAAGTACAGCGTTTTAAAGATCACGGCGAAGTCTGGCATGT
GGGCGCGCTCACTCAATTATTAGCAGAGCGAGTTGAGCAGCCTGCCCCAGTGATTACAAGTGTGCCCGTTCACTGGCAGC
GCTTCTTAAAACGAGGTTTCAACCAGAGCCACATCTTGGCCAAACACCTCGCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAACGTCCAATCACAACGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCGCCCGGTTCG
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

97.51

100

0.975
  comF Vibrio cholerae strain A1552

47.479

98.755

0.469