Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PUN35_RS05935 Genome accession   NZ_CP117986
Coordinates   1063376..1064155 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. N3378-2at     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1058376..1069155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN35_RS05905 fliH 1058407..1059159 (-) 753 WP_014479782.1 flagellar assembly protein FliH -
  PUN35_RS05910 fliG 1059152..1060168 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  PUN35_RS05915 fliF 1060181..1061778 (-) 1598 Protein_1176 flagellar basal-body MS-ring/collar protein FliF -
  PUN35_RS05920 fliE 1061824..1062144 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  PUN35_RS05925 flgC 1062155..1062607 (-) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  PUN35_RS05930 flgB 1062607..1062996 (-) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  PUN35_RS05935 codY 1063376..1064155 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PUN35_RS05940 hslU 1064195..1065598 (-) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  PUN35_RS05945 clpQ 1065615..1066160 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  PUN35_RS05950 xerC 1066173..1067087 (-) 915 WP_014479777.1 tyrosine recombinase XerC -
  PUN35_RS05955 trmFO 1067155..1068462 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=788887 PUN35_RS05935 WP_003220850.1 1063376..1064155(-) (codY) [Bacillus sp. N3378-2at]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=788887 PUN35_RS05935 WP_003220850.1 1063376..1064155(-) (codY) [Bacillus sp. N3378-2at]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467