Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   PTA89_RS08350 Genome accession   NZ_CP117983
Coordinates   1705133..1705963 (-) Length   276 a.a.
NCBI ID   WP_003709392.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain B4311     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1700133..1710963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTA89_RS08330 dhaQ 1701263..1702219 (+) 957 WP_268857412.1 DhaKLM operon coactivator DhaQ -
  PTA89_RS08335 dhaS 1702220..1702744 (-) 525 WP_003709398.1 dihydroxyacetone kinase transcriptional activator DhaS -
  PTA89_RS08340 brnQ 1702891..1704273 (-) 1383 WP_324177209.1 branched-chain amino acid transport system II carrier protein -
  PTA89_RS08345 - 1704812..1705078 (+) 267 WP_003701014.1 hypothetical protein -
  PTA89_RS08350 endA 1705133..1705963 (-) 831 WP_003709392.1 DNA/RNA non-specific endonuclease Machinery gene
  PTA89_RS08355 - 1706332..1706934 (+) 603 WP_324177210.1 nitroreductase family protein -
  PTA89_RS08360 - 1706989..1708920 (-) 1932 WP_099459604.1 heavy metal translocating P-type ATPase -
  PTA89_RS08365 - 1709043..1709384 (+) 342 WP_044005624.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30410.73 Da        Isoelectric Point: 10.4970

>NTDB_id=788860 PTA89_RS08350 WP_003709392.1 1705133..1705963(-) (endA) [Ligilactobacillus salivarius strain B4311]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTNHISTPFNNEVASSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKALDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide


Download         Length: 831 bp        

>NTDB_id=788860 PTA89_RS08350 WP_003709392.1 1705133..1705963(-) (endA) [Ligilactobacillus salivarius strain B4311]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAATTTATGAGATGGTTAGCTACCGTTGCTGTAGGGGTTGCTTTAGCAGC
AGTAGGGGTTAATACAAATCATATTAGTACACCATTTAATAATGAGGTTGCAAGTAGTAGTACATATAACAAAAAGGATT
ACACTCCTACTGAGGAACAAGCAAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGATTCATTGAATCGACCAACTGTTGCGAATGCTTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGCCAAGCTA
CAGGAAATGGACGTACAAGTTGGAAGCCACAAGGATTTAGGCAGGTACAAAATTTGCCTGGTAGATTCAAGCATGCTTAT
GATAGAGGACATTTATTAGCATATGCGCTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAATCTAATGAAAAGAATAT
AGCTACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAAGACTCTACTGGACAAAATTACTACGAAGGATTGGTAAGAA
AAGCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGAGCA
CATTTGGAAGCTAAATCATCAGATGGTTCGCTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACAGGACAAGCTACTAGAAAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.538

80.797

0.489
  endA Streptococcus pneumoniae D39

60.538

80.797

0.489
  endA Streptococcus pneumoniae R6

60.538

80.797

0.489
  endA Streptococcus pneumoniae TIGR4

60.538

80.797

0.489