Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q6G12_RS02460 Genome accession   NZ_CP130900
Coordinates   541486..542211 (-) Length   241 a.a.
NCBI ID   WP_019681102.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CW13     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 536486..547211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6G12_RS02435 (Q6G12_02435) - 536958..537473 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  Q6G12_RS02440 (Q6G12_02440) rarD 538163..539059 (-) 897 WP_003103301.1 EamA family transporter RarD -
  Q6G12_RS02445 (Q6G12_02445) - 539262..540236 (-) 975 WP_003103303.1 serine/threonine protein kinase -
  Q6G12_RS02450 (Q6G12_02450) - 540298..541056 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  Q6G12_RS02455 (Q6G12_02455) - 541124..541444 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  Q6G12_RS02460 (Q6G12_02460) comF 541486..542211 (-) 726 WP_019681102.1 ComF family protein Machinery gene
  Q6G12_RS02465 (Q6G12_02465) - 542350..542643 (-) 294 WP_003084806.1 hypothetical protein -
  Q6G12_RS02470 (Q6G12_02470) - 542697..543623 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  Q6G12_RS02475 (Q6G12_02475) - 543741..544499 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  Q6G12_RS02480 (Q6G12_02480) - 544576..544824 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  Q6G12_RS02485 (Q6G12_02485) - 544835..546211 (+) 1377 WP_003113254.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  Q6G12_RS02490 (Q6G12_02490) - 546213..547091 (+) 879 WP_003103323.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27069.55 Da        Isoelectric Point: 11.0325

>NTDB_id=788696 Q6G12_RS02460 WP_019681102.1 541486..542211(-) (comF) [Pseudomonas aeruginosa strain CW13]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLHCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=788696 Q6G12_RS02460 WP_019681102.1 541486..542211(-) (comF) [Pseudomonas aeruginosa strain CW13]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCACTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382