Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PT966_RS08370 Genome accession   NZ_CP117945
Coordinates   1649505..1650284 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain ZY1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1644505..1655284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT966_RS08350 (PT966_08350) trmFO 1645192..1646499 (+) 1308 WP_072588509.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PT966_RS08355 (PT966_08355) xerC 1646569..1647486 (+) 918 WP_043867088.1 tyrosine recombinase XerC -
  PT966_RS08360 (PT966_08360) hslV 1647502..1648047 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  PT966_RS08365 (PT966_08365) hslU 1648055..1649467 (+) 1413 WP_254900101.1 HslU--HslV peptidase ATPase subunit -
  PT966_RS08370 (PT966_08370) codY 1649505..1650284 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PT966_RS08375 (PT966_08375) flgB 1650638..1651027 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  PT966_RS08380 (PT966_08380) flgC 1651027..1651479 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  PT966_RS08385 (PT966_08385) fliE 1651490..1651810 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  PT966_RS08390 (PT966_08390) fliF 1651853..1653463 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  PT966_RS08395 (PT966_08395) fliG 1653476..1654492 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  PT966_RS08400 (PT966_08400) fliH 1654485..1655240 (+) 756 WP_003154255.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=788416 PT966_RS08370 WP_003154263.1 1649505..1650284(+) (codY) [Bacillus velezensis strain ZY1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=788416 PT966_RS08370 WP_003154263.1 1649505..1650284(+) (codY) [Bacillus velezensis strain ZY1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471