Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Q6382_RS11195 Genome accession   NZ_CP130894
Coordinates   2134687..2135352 (+) Length   221 a.a.
NCBI ID   WP_047918678.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1914215     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2129687..2140352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6382_RS11170 (Q6382_11170) cysT 2129957..2130795 (-) 839 Protein_2149 sulfate ABC transporter permease subunit CysT -
  Q6382_RS11175 (Q6382_11175) - 2130981..2131313 (+) 333 WP_003687908.1 hypothetical protein -
  Q6382_RS11180 (Q6382_11180) - 2131643..2132152 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q6382_RS11185 (Q6382_11185) - 2132382..2132962 (-) 581 Protein_2152 superoxide dismutase -
  Q6382_RS11190 (Q6382_11190) dnaB 2133126..2134532 (+) 1407 WP_003690896.1 replicative DNA helicase -
  Q6382_RS11195 (Q6382_11195) pilH 2134687..2135352 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6382_RS11200 (Q6382_11200) pilV 2135384..2135995 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Regulator
  Q6382_RS11205 (Q6382_11205) pilJ 2135992..2136972 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  Q6382_RS11210 (Q6382_11210) pilK 2136951..2137562 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q6382_RS11215 (Q6382_11215) pilL 2137564..2138040 (+) 477 WP_203004379.1 PilX family type IV pilin Machinery gene
  Q6382_RS11220 (Q6382_11220) - 2138110..2138418 (-) 309 WP_010951048.1 AzlD family protein -
  Q6382_RS11225 (Q6382_11225) - 2138415..2139122 (-) 708 Protein_2160 AzlC family ABC transporter permease -
  Q6382_RS11230 (Q6382_11230) dut 2139288..2139740 (+) 453 WP_103195211.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24613.96 Da        Isoelectric Point: 8.6140

>NTDB_id=788327 Q6382_RS11195 WP_047918678.1 2134687..2135352(+) (pilH) [Neisseria gonorrhoeae strain NJ1914215]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDFGKKEQGMLAFGDKNDNKAYDGDAADVFLRNVVLNDDIKDKRINYTFNHIAFGSSQPTADRVVWTFNQNGTFGYTK
DQHLASTSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=788327 Q6382_RS11195 WP_047918678.1 2134687..2135352(+) (pilH) [Neisseria gonorrhoeae strain NJ1914215]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTGCAAGCACATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.878

100

0.869