Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PQ478_RS04225 Genome accession   NZ_CP117835
Coordinates   824065..826383 (+) Length   772 a.a.
NCBI ID   WP_289235917.1    Uniprot ID   A0AAJ2KRW2
Organism   Alkalihalophilus pseudofirmus strain DSM 8715     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 819065..831383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ478_RS04200 (PQ478_04200) - 819918..820613 (+) 696 WP_083633491.1 YitT family protein -
  PQ478_RS04205 (PQ478_04205) - 820558..820977 (+) 420 WP_012957783.1 Rrf2 family transcriptional regulator -
  PQ478_RS04210 (PQ478_04210) - 821000..822163 (+) 1164 WP_289236933.1 cysteine desulfurase family protein -
  PQ478_RS04215 (PQ478_04215) mnmA 822185..823288 (+) 1104 WP_075683101.1 tRNA 2-thiouridine(34) synthase MnmA -
  PQ478_RS04220 (PQ478_04220) - 823366..824052 (+) 687 WP_289235916.1 tetratricopeptide repeat protein -
  PQ478_RS04225 (PQ478_04225) recD2 824065..826383 (+) 2319 WP_289235917.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PQ478_RS04230 (PQ478_04230) - 826435..826911 (+) 477 WP_012957788.1 PRC-barrel domain-containing protein -
  PQ478_RS04235 (PQ478_04235) - 826925..827113 (+) 189 WP_012957789.1 hypothetical protein -
  PQ478_RS04240 (PQ478_04240) - 827139..827327 (+) 189 WP_012957790.1 DUF3918 family protein -
  PQ478_RS04245 (PQ478_04245) - 827458..828522 (+) 1065 WP_012957791.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 772 a.a.        Molecular weight: 86918.59 Da        Isoelectric Point: 5.1171

>NTDB_id=787841 PQ478_RS04225 WP_289235917.1 824065..826383(+) (recD2) [Alkalihalophilus pseudofirmus strain DSM 8715]
MDEQQSLEQDNGIERGYIKGEVLHLVFRNDENAYTVALIRVSETNEELKDKKITVVGILPQLDVAETFLFFGTITDHPRF
GQQYQVEQFRRDLPQTKNGIIQYLSSDRFPGIGKRTAETIVEVLGERAITRIVEDRAVLKAVPKLSKEKADQLYQQLIDQ
QGVEQVLMTLSKHGFGLELSMKVYQKYGFQALDIIQTNPYQLIADVEGIGFRKADLLGAAIGLTGNHPDRIRAGLLFVVQ
ELCLQDGHVYIEKEELIPHVKQLLSSPDASISTEEVEHELLTMEEEDALVLEETRVYIKSLYFAEKGIVSSVRRLMATEV
KDEFPESEFLKTLGELEEELKIEYAPQQKEAIQTALANPFMLLTGGPGTGKTTVIKGIVETYARLNGLSLDPKAYTKSNP
FPILLVAPTGRAAKRMSEATELPAVTIHRLLGWKGGNGGFEKGEHEQLEGELIIVDEVSMVDIWLANQLLKAIPKGMQVV
FVGDQDQLPSVGPGQVLKDFLDAEVVPTVPLTAIYRQKEGSSIIELAHEMKQGKMPSDLPEAKPDRRFFPCTTDHVQHVV
TQICENAIKKGYLARDIQVLAPMYKGQAGITELNRILQELFNPKTEQKRELLYGELSYRTGDVVLQLVNNPDENVYNGDR
GEIVAIFYAKENTEKQDQVVISFDGTEVVYNKKDLNQITHAYCCSIHKSQGSEFPIVVMPVVRNYSRMLRRNLIYTGITR
AKKFLLLCGELKSFHTAVTREDELIRYSMLKDKLVALKQSQQEYENGNGQLT

Nucleotide


Download         Length: 2319 bp        

>NTDB_id=787841 PQ478_RS04225 WP_289235917.1 824065..826383(+) (recD2) [Alkalihalophilus pseudofirmus strain DSM 8715]
ATGGATGAACAACAATCCTTAGAACAAGATAACGGAATAGAGCGTGGCTATATAAAAGGCGAGGTTCTCCATCTCGTCTT
TAGAAATGATGAAAATGCCTACACTGTAGCTCTGATTCGGGTCAGTGAAACAAATGAAGAGCTAAAGGATAAGAAAATAA
CGGTAGTGGGAATCCTTCCGCAGCTGGATGTAGCTGAAACCTTTTTGTTTTTTGGGACCATCACTGACCATCCACGTTTT
GGACAGCAGTATCAAGTAGAGCAATTTAGACGAGATCTGCCTCAAACAAAGAACGGCATCATTCAATATCTTTCAAGTGA
TCGCTTCCCAGGGATCGGCAAGAGGACAGCAGAAACGATTGTTGAGGTATTAGGGGAAAGGGCCATTACTCGGATTGTTG
AAGACCGAGCTGTGCTAAAAGCTGTACCAAAGCTCTCTAAAGAAAAAGCAGACCAATTATATCAGCAGCTCATAGACCAA
CAAGGAGTTGAACAGGTCCTAATGACGCTGTCAAAGCACGGATTTGGTCTTGAACTATCAATGAAGGTATATCAAAAGTA
TGGGTTTCAAGCACTTGATATTATTCAAACAAATCCTTATCAGCTGATTGCAGATGTAGAAGGGATTGGATTTAGGAAAG
CTGATTTACTTGGAGCTGCGATTGGTTTAACAGGGAATCACCCAGACAGGATCCGAGCGGGGCTTTTGTTTGTTGTACAA
GAATTATGCTTACAAGATGGACATGTCTATATCGAAAAAGAAGAATTGATCCCTCATGTAAAACAACTGTTATCGTCACC
AGATGCGTCAATAAGTACAGAAGAAGTCGAGCATGAGCTTTTAACGATGGAAGAGGAGGATGCGCTTGTACTTGAGGAAA
CGCGCGTCTATATAAAATCACTGTATTTTGCTGAAAAAGGAATTGTCTCAAGTGTAAGGAGACTCATGGCTACGGAGGTT
AAGGATGAATTCCCGGAATCGGAGTTCTTAAAAACACTAGGCGAGCTTGAGGAAGAGTTGAAAATTGAATACGCACCGCA
GCAGAAAGAAGCGATTCAAACAGCGTTAGCTAATCCTTTTATGCTCCTTACAGGGGGGCCGGGAACGGGAAAGACAACGG
TTATTAAAGGAATTGTCGAAACGTATGCAAGGCTTAACGGTTTATCACTTGACCCTAAAGCGTACACTAAATCCAATCCA
TTTCCGATCTTACTTGTCGCACCAACTGGAAGAGCGGCAAAGCGGATGAGTGAGGCAACAGAACTGCCTGCTGTTACCAT
TCATAGGCTGCTTGGCTGGAAAGGCGGAAATGGTGGATTTGAAAAAGGAGAACATGAGCAGCTGGAAGGAGAATTGATTA
TTGTCGATGAGGTTTCAATGGTTGACATCTGGCTTGCTAATCAATTGTTAAAGGCGATCCCTAAAGGCATGCAGGTCGTT
TTTGTAGGAGATCAAGATCAATTGCCTTCAGTTGGACCTGGCCAAGTACTTAAAGATTTCTTAGATGCAGAGGTTGTTCC
AACGGTTCCTTTAACAGCGATCTATAGACAAAAGGAAGGCTCCTCGATCATCGAACTCGCCCACGAGATGAAACAAGGGA
AAATGCCTAGCGACCTGCCTGAAGCGAAGCCTGATCGACGGTTCTTTCCGTGTACAACCGATCACGTCCAGCATGTTGTG
ACACAGATTTGTGAAAATGCCATAAAAAAAGGGTATCTTGCCAGAGACATACAAGTACTGGCTCCGATGTATAAAGGGCA
GGCGGGGATTACGGAACTCAATCGTATTCTCCAAGAGCTTTTCAACCCTAAGACAGAGCAAAAACGAGAGCTTTTATACG
GGGAACTTTCTTACCGGACAGGAGATGTTGTACTTCAGCTCGTAAACAATCCTGATGAAAATGTGTACAACGGAGACCGC
GGAGAAATTGTGGCGATTTTCTATGCAAAAGAAAATACAGAAAAACAAGATCAGGTTGTGATTAGTTTTGATGGAACAGA
GGTTGTCTACAATAAGAAAGATTTAAATCAAATTACACATGCTTATTGCTGTTCGATCCATAAATCGCAAGGAAGCGAAT
TTCCAATCGTTGTCATGCCTGTAGTACGTAATTATTCTCGGATGCTGAGGAGAAATTTAATTTATACAGGGATTACTCGG
GCAAAAAAATTCCTGCTTCTATGCGGGGAATTAAAATCCTTTCATACCGCAGTTACACGAGAAGATGAGTTAATCAGGTA
TTCGATGTTAAAAGACAAGCTTGTCGCCCTAAAACAATCTCAACAGGAATATGAGAATGGAAATGGTCAACTAACATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-663)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)

AAA domain (AAA_30)

(344-538)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.026

97.798

0.548