Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PQ477_RS15495 Genome accession   NZ_CP117834
Coordinates   3040184..3042442 (+) Length   752 a.a.
NCBI ID   WP_274272414.1    Uniprot ID   -
Organism   Shouchella hunanensis strain DSM 23008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3035184..3047442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ477_RS15470 (PQ477_15470) - 3035329..3036591 (-) 1263 WP_144558711.1 replication-associated recombination protein A -
  PQ477_RS15475 (PQ477_15475) - 3036775..3037194 (+) 420 WP_035396059.1 Rrf2 family transcriptional regulator -
  PQ477_RS15480 (PQ477_15480) - 3037207..3038364 (+) 1158 WP_274272413.1 cysteine desulfurase family protein -
  PQ477_RS15485 (PQ477_15485) mnmA 3038388..3039479 (+) 1092 WP_060705989.1 tRNA 2-thiouridine(34) synthase MnmA -
  PQ477_RS15490 (PQ477_15490) - 3039514..3040173 (+) 660 WP_060705976.1 tetratricopeptide repeat protein -
  PQ477_RS15495 (PQ477_15495) recD2 3040184..3042442 (+) 2259 WP_274272414.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PQ477_RS15500 (PQ477_15500) - 3042516..3042989 (+) 474 WP_349775486.1 hypothetical protein -
  PQ477_RS15505 (PQ477_15505) - 3043004..3043192 (+) 189 WP_176463610.1 hypothetical protein -
  PQ477_RS15510 (PQ477_15510) - 3043213..3043398 (+) 186 WP_035396047.1 hypothetical protein -
  PQ477_RS15515 (PQ477_15515) - 3043490..3044575 (+) 1086 WP_274272415.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84324.64 Da        Isoelectric Point: 6.2768

>NTDB_id=787822 PQ477_RS15495 WP_274272414.1 3040184..3042442(+) (recD2) [Shouchella hunanensis strain DSM 23008]
MDVEETGRYIKGKVTHVLFRNAENDYTVATVKIDKTNEQIEAKKTTIVGHLPELEMDETYSFFGQVTEHPKFGTQYKVET
FKREMPKTKNGIIKFLSSDRFPGIGTKTAETIVNELGERAISLIIEDQHVLDRVPKLKKENAMMLHQRLLEHQGAEQVII
QLSQYGFGTELSMNVYRAYKLQALDIIRTNPYLLIKDVEGVGFRRADQLGAAIGLTGDHPERVRAGILYLINELSIQDGH
LFLYTDSFVQEVVLLLHTPTKPVSGETVQQIIKEMNEDGLVVTEHDRIYMKSLFYAERGIAQNIMRIKSYELKSEFTQAD
MEKTLGELEENHNVTYSPLQKEAIEKALHSPIMLLTGGPGTGKTTVIKGIVESYARLQGVNLDGQGNGEKDNRSLPIKLA
APTGRAAKRMAEATELAAGTIHSLLGWKGSTTGFDKGDHDQLEGELLIVDEMSMVDAWVANQLFKAIPKGMQVILVGDEN
QLPSVGPGQVLKDLLDANVIPTVQLSEIYRQAEGSSIIELAHSMKDGHLPTDLTAKKPDLRFFSCHTHQVKQAVWQICEN
ALTKGYSPREIQVLAPIYRGGAGIIELNTMLQTLFNPAKEGRRELPFGDVIFRKGDMVLQLVNNAEENVFNGDRGEIVAV
LYAKETTEKKDQLVVSFDGLEVTYEKKDFTQLTHAYCSSIHKAQGSEFPIVVMPVVGNYQRMLRRNLLYTGITRAKQFLL
LCGDINTFEQAIQKSNDGRQSLLKDRLQERMM

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=787822 PQ477_RS15495 WP_274272414.1 3040184..3042442(+) (recD2) [Shouchella hunanensis strain DSM 23008]
ATGGATGTTGAAGAAACAGGAAGATACATTAAAGGAAAAGTGACACACGTGCTATTCCGTAATGCTGAAAATGATTATAC
GGTTGCTACTGTTAAAATTGATAAAACGAATGAACAAATTGAAGCGAAGAAAACAACAATAGTCGGTCACCTTCCAGAGC
TTGAGATGGACGAAACGTATTCGTTTTTTGGACAGGTTACCGAACACCCAAAGTTTGGTACACAATATAAAGTTGAGACA
TTTAAAAGGGAAATGCCTAAAACGAAAAATGGTATTATTAAATTTCTTTCAAGTGATCGTTTTCCTGGTATTGGAACGAA
AACAGCCGAAACGATTGTTAATGAACTAGGTGAACGCGCAATTTCGCTTATTATTGAAGATCAGCATGTTCTTGATCGAG
TGCCAAAGTTGAAAAAAGAGAATGCTATGATGCTTCATCAACGTTTATTAGAACATCAAGGAGCCGAACAAGTTATTATT
CAGTTATCTCAATATGGCTTTGGGACAGAGCTATCAATGAATGTGTATCGCGCGTATAAACTTCAAGCACTTGATATTAT
TCGTACTAATCCATATTTATTAATAAAAGACGTAGAAGGAGTTGGTTTTCGCCGCGCCGATCAGCTTGGGGCAGCCATTG
GCTTAACTGGGGATCATCCGGAACGCGTGCGTGCGGGCATCTTATATTTAATTAATGAATTAAGTATTCAAGATGGGCAC
CTTTTTCTTTATACGGACTCGTTTGTTCAAGAGGTTGTGCTATTGTTACATACGCCAACTAAGCCTGTAAGTGGTGAGAC
CGTTCAACAAATCATCAAAGAAATGAATGAAGATGGTCTTGTTGTAACAGAGCATGACCGTATTTATATGAAATCCCTTT
TTTATGCGGAGCGAGGAATCGCGCAAAATATTATGCGGATTAAATCCTATGAGCTTAAATCTGAATTTACGCAAGCAGAT
ATGGAAAAAACCCTTGGTGAGCTGGAAGAAAATCATAATGTAACGTATTCTCCTTTACAAAAAGAAGCAATAGAAAAGGC
ACTTCATTCACCTATCATGCTGTTGACTGGAGGCCCAGGTACAGGGAAAACCACCGTTATAAAAGGAATTGTAGAATCTT
ATGCACGTTTACAAGGTGTGAATCTTGATGGGCAAGGAAATGGTGAAAAAGACAATCGGTCTTTGCCAATCAAGCTAGCT
GCGCCTACGGGGCGTGCAGCGAAACGAATGGCTGAAGCAACCGAGCTAGCTGCTGGTACAATTCATAGCTTACTTGGCTG
GAAAGGAAGCACTACAGGTTTTGATAAAGGAGATCACGATCAGCTCGAAGGTGAACTGTTAATTGTAGATGAAATGTCCA
TGGTTGATGCATGGGTGGCCAATCAGTTGTTTAAAGCGATTCCAAAAGGGATGCAAGTCATTCTTGTCGGTGATGAAAAT
CAATTACCATCTGTTGGTCCAGGACAAGTACTAAAAGATTTGCTTGATGCGAATGTTATTCCCACCGTTCAGTTAAGCGA
AATTTATCGACAGGCCGAAGGTTCATCCATTATTGAGCTAGCTCATTCCATGAAAGATGGTCATTTGCCAACTGATCTTA
CCGCAAAAAAACCTGATTTACGCTTCTTCTCCTGTCACACCCATCAAGTGAAGCAAGCTGTTTGGCAAATATGTGAAAAT
GCACTAACAAAAGGCTATAGTCCCAGGGAAATTCAAGTATTAGCTCCGATCTATCGGGGTGGAGCTGGCATTATTGAGTT
AAATACAATGTTGCAAACACTCTTTAATCCAGCTAAAGAAGGCCGGAGAGAACTACCTTTCGGTGATGTTATTTTTCGTA
AAGGTGACATGGTGCTTCAACTTGTGAATAATGCAGAAGAAAACGTCTTTAATGGAGACAGAGGAGAAATTGTAGCTGTC
CTTTATGCCAAAGAAACGACGGAGAAAAAAGACCAGCTCGTTGTATCATTCGATGGATTAGAAGTGACGTACGAGAAAAA
AGACTTCACTCAATTAACCCATGCCTATTGTTCTTCTATTCATAAAGCTCAAGGGAGTGAATTTCCTATTGTCGTCATGC
CGGTCGTTGGGAATTATCAACGCATGCTACGACGGAATTTGTTATACACGGGGATTACAAGAGCAAAGCAGTTCTTACTT
TTATGCGGTGATATAAATACATTTGAACAAGCGATTCAAAAAAGTAATGACGGCAGGCAATCATTATTAAAAGACCGACT
TCAAGAACGAATGATGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(336-533)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(587-657)

Helix-hairpin-helix containing domain (HHH_RecD2)

(151-242)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-722)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

55.02

99.335

0.547