Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   PQ477_RS15395 Genome accession   NZ_CP117834
Coordinates   3019386..3021740 (+) Length   784 a.a.
NCBI ID   WP_144558703.1    Uniprot ID   -
Organism   Shouchella hunanensis strain DSM 23008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3014386..3026740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ477_RS15365 (PQ477_15365) - 3014411..3014653 (+) 243 WP_095149946.1 hypothetical protein -
  PQ477_RS15370 (PQ477_15370) spoVB 3014721..3016262 (-) 1542 WP_274272408.1 stage V sporulation protein B -
  PQ477_RS15375 (PQ477_15375) - 3016436..3016738 (+) 303 WP_060705969.1 post-transcriptional regulator -
  PQ477_RS15380 (PQ477_15380) secD 3016756..3018060 (+) 1305 WP_144558701.1 protein translocase subunit SecD -
  PQ477_RS15385 (PQ477_15385) secF 3018050..3018991 (+) 942 WP_144558702.1 protein translocase subunit SecF -
  PQ477_RS15390 (PQ477_15390) - 3019013..3019321 (+) 309 WP_035396077.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  PQ477_RS15395 (PQ477_15395) recJ 3019386..3021740 (+) 2355 WP_144558703.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  PQ477_RS15400 (PQ477_15400) - 3021730..3022245 (+) 516 WP_144558704.1 adenine phosphoribosyltransferase -
  PQ477_RS15405 (PQ477_15405) - 3022369..3024561 (+) 2193 WP_144558705.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  PQ477_RS15410 (PQ477_15410) dtd 3024583..3025032 (+) 450 WP_274272409.1 D-aminoacyl-tRNA deacylase -
  PQ477_RS15415 (PQ477_15415) - 3025186..3026199 (+) 1014 WP_035396071.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 86990.02 Da        Isoelectric Point: 4.6957

>NTDB_id=787821 PQ477_RS15395 WP_144558703.1 3019386..3021740(+) (recJ) [Shouchella hunanensis strain DSM 23008]
MLQPNARWRILEQDTTEVTNLVNELNLSQVAARLLVNRGFTNPETASEFLMKDEPAFLDPFLLKGMAEAVNRIQSAVEKN
EQILVFGDYDADGVSSTAVLVTALKMIGAGCDYYIPNRFTEGYGPNNPALQWAKDEGYSLVITVDTGISAVTQADFAKEI
GLDFIVTDHHEPPPTLPNSYTTINPKQPGCTYPFKELAGVGVAFKVAHGLLGRVPNELLDYAVIGTIADLVPLVGENRLL
AKKGLRAFQTSDKTGIQALKDVCGMTAGEVEADHIGFAIGPRLNAAGRLDSAIPAVELLLAESREEADELATEIDRLNKE
RQKVVNDISKEAMDVVQEMDGIPEALVVAKEGWNAGVIGIVASRLVEKFYRPTIVLTIDPETGLAKGSARSIEGFDMFAE
LSKSRDILPHFGGHPMAAGMTLQSEHVDSLRERLIEQAKTGLAPEAFIPITTIDLTVAVDDVTIDVLKEIEELSPFGVEN
AKPKVLIDDVKLADIKRIGSDSSHLKFQFAGEEKTLDGIAFRKGDLFEHITPQASVSAVGTLSINEWNGRVKPQLIVDDL
AVKQWQLFDWRSLQLNRVGARLEDLPAEKSIVIAFQEKTFAACQERGIVVYRSSDPLPSFTNKYIVILDVPSHREELYCL
FEEGSKPSRIYVVFSEEEESFFKTNPNRDQFKWYYAFLKKRQSFKIADLKKLEAHKGWSSETTSFMNQVFIDLGFIQMDD
QYLTIVEAPAKKALSDSKTYQAKQEQTWLENELVYASYGQLRELFSERIGSNASQKKETIVHGL

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=787821 PQ477_RS15395 WP_144558703.1 3019386..3021740(+) (recJ) [Shouchella hunanensis strain DSM 23008]
ATGTTGCAACCAAACGCAAGGTGGCGCATTTTAGAGCAAGATACAACAGAAGTAACGAATTTAGTAAATGAATTAAATCT
TTCCCAAGTTGCCGCGAGGCTTTTGGTTAATAGAGGTTTTACTAATCCAGAAACTGCAAGTGAATTTCTAATGAAAGATG
AACCAGCGTTTCTTGATCCATTTTTATTAAAGGGAATGGCGGAAGCTGTTAATCGAATTCAATCTGCAGTCGAGAAAAAT
GAACAAATTCTTGTATTCGGAGATTATGATGCTGATGGTGTAAGCTCAACTGCTGTTCTCGTTACCGCTTTAAAAATGAT
TGGAGCGGGCTGTGACTACTATATCCCAAACCGCTTTACTGAGGGATACGGACCGAATAATCCAGCGCTTCAGTGGGCAA
AAGATGAAGGCTACTCTCTTGTCATTACAGTAGATACAGGAATTTCTGCTGTAACACAAGCCGATTTTGCCAAAGAAATT
GGGTTGGATTTTATTGTTACGGATCATCATGAACCACCGCCAACACTTCCAAATAGTTATACAACGATTAATCCGAAGCA
ACCTGGCTGCACGTATCCTTTTAAGGAATTAGCAGGTGTGGGTGTCGCATTTAAAGTGGCACATGGACTACTAGGGCGTG
TTCCAAACGAGTTGCTCGACTATGCCGTTATTGGAACGATTGCTGATCTTGTTCCATTGGTCGGAGAGAATCGTTTGCTT
GCTAAAAAGGGCCTTCGTGCATTTCAAACATCAGATAAAACAGGTATCCAAGCGTTAAAAGATGTATGTGGTATGACTGC
TGGAGAAGTGGAAGCTGATCATATTGGCTTTGCCATTGGACCAAGGCTGAATGCTGCTGGTCGATTGGATTCAGCCATTC
CGGCTGTTGAACTGCTACTTGCTGAAAGTCGAGAAGAAGCGGATGAATTAGCTACGGAAATAGATCGCTTAAATAAGGAA
CGCCAAAAAGTTGTAAACGACATATCGAAAGAAGCAATGGATGTTGTTCAGGAGATGGATGGAATTCCAGAAGCCCTTGT
TGTTGCAAAAGAAGGCTGGAATGCAGGGGTAATCGGAATTGTTGCATCTCGACTAGTCGAGAAATTTTATCGTCCAACCA
TTGTACTAACAATTGATCCAGAGACGGGCTTAGCTAAGGGATCTGCTCGAAGCATTGAGGGTTTTGACATGTTTGCAGAA
TTATCAAAAAGTCGAGATATCCTTCCTCACTTTGGTGGGCATCCAATGGCTGCAGGGATGACGTTACAAAGCGAACATGT
TGATAGCTTACGTGAACGACTCATCGAGCAGGCAAAAACAGGTCTAGCGCCAGAAGCGTTTATACCAATAACCACCATTG
ATTTAACGGTAGCTGTTGATGATGTCACCATTGATGTGCTAAAAGAAATAGAAGAGCTATCTCCTTTCGGTGTAGAGAAT
GCAAAGCCAAAAGTGTTAATTGATGATGTGAAGCTTGCAGATATTAAACGAATTGGTAGTGATTCGAGTCATTTGAAATT
TCAGTTTGCAGGAGAAGAGAAGACGCTGGATGGAATTGCGTTTCGTAAAGGTGATTTATTTGAACATATTACGCCACAAG
CAAGCGTGTCTGCAGTTGGGACGCTGTCAATTAATGAGTGGAACGGTCGAGTGAAGCCACAGCTAATAGTGGATGACCTT
GCTGTGAAACAATGGCAGCTCTTTGATTGGCGAAGCTTACAATTGAATCGAGTAGGAGCACGATTAGAAGATTTACCTGC
TGAAAAGTCAATTGTTATTGCTTTCCAAGAAAAAACCTTTGCAGCATGTCAAGAGCGAGGCATTGTAGTCTATCGCTCAA
GTGATCCTTTACCTTCTTTTACAAATAAATATATTGTCATACTGGATGTTCCGTCACATCGGGAAGAGCTTTATTGCCTA
TTTGAAGAGGGTAGTAAGCCTAGTCGAATCTATGTTGTTTTTTCCGAAGAAGAAGAATCGTTTTTTAAAACGAATCCAAA
TCGAGATCAATTCAAATGGTATTACGCATTTCTAAAGAAACGACAGTCATTTAAGATAGCTGATCTTAAAAAGCTTGAGG
CGCATAAAGGATGGTCCTCTGAAACCACTTCATTTATGAACCAAGTATTTATTGATTTAGGCTTTATTCAAATGGATGAT
CAGTATTTGACTATTGTTGAAGCACCAGCAAAAAAAGCCTTAAGTGATTCAAAAACGTATCAAGCAAAACAAGAACAAAC
GTGGCTCGAAAATGAACTCGTTTATGCTTCTTATGGGCAACTTAGAGAGTTATTTTCAGAACGAATAGGAAGCAATGCTT
CACAGAAGAAGGAGACGATCGTACATGGATTATAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-765)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

49.178

100

0.496