Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   PT256_RS00975 Genome accession   NZ_CP117817
Coordinates   160016..160708 (+) Length   230 a.a.
NCBI ID   WP_011212783.1    Uniprot ID   -
Organism   Legionella pneumophila strain D5573     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 155016..165708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT256_RS00955 (PT256_00955) - 155637..155813 (-) 177 WP_014840774.1 dodecin domain-containing protein -
  PT256_RS00960 (PT256_00960) - 155991..158459 (+) 2469 WP_061637889.1 hypothetical protein -
  PT256_RS00965 (PT256_00965) dapB 158563..159294 (-) 732 WP_027225347.1 4-hydroxy-tetrahydrodipicolinate reductase -
  PT256_RS00970 (PT256_00970) - 159474..159659 (-) 186 WP_011212782.1 hypothetical protein -
  PT256_RS00975 (PT256_00975) rocC 160016..160708 (+) 693 WP_011212783.1 ProQ/FinO family protein Regulator
  PT256_RS00980 (PT256_00980) - 160709..161779 (+) 1071 WP_061784072.1 hypothetical protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25773.65 Da        Isoelectric Point: 10.6563

>NTDB_id=787673 PT256_RS00975 WP_011212783.1 160016..160708(+) (rocC) [Legionella pneumophila strain D5573]
MRKQALHPRTAVINKAQKNQSKRARSDALLWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGVSKSKLREAVVL
FTRRLDYLACLKAREVRIDLHGNPVAEVTEEEAENASMKIKKRVEKSVKNARKQVNAKAANHSYVNNQPSTVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEDKKETTE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=787673 PT256_RS00975 WP_011212783.1 160016..160708(+) (rocC) [Legionella pneumophila strain D5573]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAAGCGCGCGCGATCTGA
CGCATTATTATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAGTTTCTAAAAGCAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATCGATTTGCACGGAAATCCAGTAGCGGA
GGTTACTGAGGAAGAAGCGGAGAATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
AAGTGAATGCAAAAGCGGCTAATCATTCATATGTAAATAATCAGCCAAGTACAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGACTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTAGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCTGTAGCTCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGATAAAAAGGAAACAACAGAGTAA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(26-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

100

100

1