Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q5417_RS02505 Genome accession   NZ_CP130750
Coordinates   553091..553816 (-) Length   241 a.a.
NCBI ID   WP_003103309.1    Uniprot ID   Q9I629
Organism   Pseudomonas aeruginosa strain AU10241     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 548091..558816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5417_RS02480 (Q5417_02480) - 548563..549078 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  Q5417_RS02485 (Q5417_02485) rarD 549768..550664 (-) 897 WP_003103301.1 EamA family transporter RarD -
  Q5417_RS02490 (Q5417_02490) - 550867..551841 (-) 975 WP_061189756.1 serine/threonine protein kinase -
  Q5417_RS02495 (Q5417_02495) - 551903..552661 (-) 759 WP_003103305.1 TOBE domain-containing protein -
  Q5417_RS02500 (Q5417_02500) - 552729..553049 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  Q5417_RS02505 (Q5417_02505) comF 553091..553816 (-) 726 WP_003103309.1 ComF family protein Machinery gene
  Q5417_RS02510 (Q5417_02510) - 553955..554248 (-) 294 WP_003084806.1 hypothetical protein -
  Q5417_RS02515 (Q5417_02515) - 554302..555228 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  Q5417_RS02520 (Q5417_02520) - 555346..556104 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  Q5417_RS02525 (Q5417_02525) - 556181..556429 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  Q5417_RS02530 (Q5417_02530) - 556440..557816 (+) 1377 WP_003103320.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  Q5417_RS02535 (Q5417_02535) - 557818..558696 (+) 879 WP_061190262.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27088.60 Da        Isoelectric Point: 11.2212

>NTDB_id=787608 Q5417_RS02505 WP_003103309.1 553091..553816(-) (comF) [Pseudomonas aeruginosa strain AU10241]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=787608 Q5417_RS02505 WP_003103309.1 553091..553816(-) (comF) [Pseudomonas aeruginosa strain AU10241]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCACTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9I629

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382