Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG382_RS26890 Genome accession   NZ_CP130722
Coordinates   5894986..5896917 (-) Length   643 a.a.
NCBI ID   WP_327259322.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01238     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5889986..5901917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG382_RS26875 (OG382_26905) - 5890195..5891454 (+) 1260 WP_266746085.1 NAD(P)/FAD-dependent oxidoreductase -
  OG382_RS26880 (OG382_26910) dnaG 5891568..5893475 (+) 1908 WP_327259321.1 DNA primase -
  OG382_RS26885 (OG382_26915) - 5893824..5894918 (+) 1095 WP_266746083.1 RNA polymerase sigma factor -
  OG382_RS26890 (OG382_26920) rcrQ 5894986..5896917 (-) 1932 WP_327259322.1 ABC transporter ATP-binding protein Regulator
  OG382_RS26895 (OG382_26925) rcrP 5896917..5898650 (-) 1734 WP_266746081.1 ABC transporter ATP-binding protein Regulator
  OG382_RS26900 (OG382_26930) - 5898820..5900265 (-) 1446 WP_266746080.1 FGGY family carbohydrate kinase -
  OG382_RS26905 (OG382_26935) - 5900338..5900646 (-) 309 WP_266746079.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69267.73 Da        Isoelectric Point: 5.3108

>NTDB_id=787374 OG382_RS26890 WP_327259322.1 5894986..5896917(-) (rcrQ) [Streptomyces sp. NBC_01238]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFAPEKAPLYVMLAACVASVGLSVVGPKILGKATDLVFAGVIGRQMPDGT
TKQQAVEGLRRANSGLADMLSGVDFVPGHGIDFGAVADVLLVALAVYVGAGLLMLVATRLSIRIINRVVFQLREDIQTKL
SRLPLSYFDQAKRGEVLSRATNDIDNISQTMQQTMGQLISSLLTIVGVLIMMFWVSPLLALVALVTVPLSVVVAAKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNEALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQSADPAPGTGERPKELRGNVSL
EKVSFRYDPEKPLIEDLSLNVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDVAKMSRDELRSGIGMVLQD
TWLFGGSIAENIAYGASREVTREEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADIILVMENGSIVEQGTHDELLAAEGAYARLYSAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=787374 OG382_RS26890 WP_327259322.1 5894986..5896917(-) (rcrQ) [Streptomyces sp. NBC_01238]
ATGGCCGGTCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGACCGGTCCATGGACTTCAAGGGGTCCTCGAAGCG
GCTCCTGAAGCGCTTCGCCCCGGAGAAGGCGCCGCTGTACGTGATGCTGGCGGCCTGCGTGGCGAGCGTCGGGCTGTCGG
TGGTCGGGCCGAAGATCCTCGGCAAGGCGACCGACCTGGTGTTCGCCGGGGTCATCGGCCGGCAGATGCCCGACGGCACG
ACGAAGCAACAGGCCGTGGAGGGCCTGCGCAGGGCCAACAGCGGCCTCGCCGACATGCTGTCCGGGGTGGACTTCGTCCC
CGGGCACGGCATCGACTTCGGTGCGGTGGCCGACGTACTGCTGGTGGCGCTGGCGGTCTATGTCGGTGCGGGGCTGCTCA
TGCTGGTGGCCACCCGACTGTCGATCCGGATCATCAACCGGGTCGTGTTCCAGCTGCGTGAGGACATTCAGACGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCAGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCCCAGACGATGCAGCAGACGATGGGTCAGCTCATCAGCTCCCTGCTCACCATCGTCGGCGTGCTGATCATGATGTTCT
GGGTCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTCGTCGTGGCCGCGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGCAAACTCAACGCCCACATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCAGGCT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTCTCGAACCTGAACTATGTGCTGATCGCCGTC
GTGGGTGGCCTGCGGGTCGCTTCGGGTTCGCTGTCGATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCGTCGGCCGAGCGCATCTTCGAGCTGC
TGGACGCCGAGGAGCAGAGCGCCGACCCCGCGCCCGGCACGGGCGAACGCCCGAAGGAGCTGCGAGGCAACGTCTCGCTG
GAGAAGGTGTCGTTCCGTTACGACCCGGAGAAGCCGCTCATCGAGGACCTCTCGCTGAACGTCGAGCCGGGCCACACGGT
CGCGATCGTCGGCCCGACCGGCGCGGGCAAGACCACGCTCGTCAATCTCCTGATGCGGTTCTACGAGGTGACGGGCGGGC
GGATCACCCTCGACGGGGTCGACGTGGCGAAGATGTCGCGCGACGAGCTGCGGTCGGGAATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGGTCGATAGCGGAGAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAAGAGATCGAGGA
GGCCGCGAGGGCCGCCCACGCCGACCGCTTCGTCCGCACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCT
CCGGCGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGAC
GAAGCGACGAGTTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTGGCGCACGGTCGTACGAG
CTTCGTGATCGCGCACCGGCTCTCCACCATCCGGGATGCCGACATCATCCTGGTGATGGAGAACGGCTCGATCGTCGAAC
AGGGCACGCACGACGAACTGCTGGCTGCCGAGGGGGCGTACGCCCGGCTGTATTCGGCGCAGTTCGCGCAGGCGGTCGCC
GAAGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(415-564)

ABC transporter transmembrane region (ABC_membrane)

(58-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.005

96.89

0.378