Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG299_RS14965 Genome accession   NZ_CP130720
Coordinates   3366860..3367915 (-) Length   351 a.a.
NCBI ID   WP_266625823.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01296     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3361860..3372915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG299_RS14945 (OG299_14960) - 3362002..3362925 (-) 924 WP_266664115.1 ABC transporter permease -
  OG299_RS14950 (OG299_14965) - 3362956..3364590 (-) 1635 WP_266625820.1 ABC transporter substrate-binding protein -
  OG299_RS14955 (OG299_14970) - 3364697..3365626 (-) 930 WP_327361733.1 GNAT family N-acetyltransferase -
  OG299_RS14960 (OG299_14975) - 3365815..3366867 (-) 1053 WP_266625822.1 dipeptide ABC transporter ATP-binding protein -
  OG299_RS14965 (OG299_14980) amiE 3366860..3367915 (-) 1056 WP_266625823.1 ABC transporter ATP-binding protein Regulator
  OG299_RS14970 (OG299_14985) - 3367929..3368885 (-) 957 WP_266625825.1 ABC transporter permease -
  OG299_RS14975 (OG299_14990) - 3368878..3369825 (-) 948 WP_266625827.1 ABC transporter permease -
  OG299_RS14980 (OG299_14995) - 3369920..3371545 (-) 1626 WP_266625828.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37931.86 Da        Isoelectric Point: 6.5723

>NTDB_id=787263 OG299_RS14965 WP_266625823.1 3366860..3367915(-) (amiE) [Streptomyces sp. NBC_01296]
MTIIDKTSNVPAPRSAPEGTPLLEVRDLHVEFHTRDGVAKAVNGVSYSVNAGETLAVLGESGSGKSVTAQAIMGILDMPP
GKIAGGEILFQGTDLLKLPAEEYRKVRGSKIAMIFQDALSSLNPVHTVGAQLGEMFRVHRGMSKKDATAKAIELMDRVKI
PAAKARVGDYPHQFSGGMRQRIMIAMAMALEPDLIIADEPTTALDVTVQAQVMDLLAELQREMNMGLILITHDLGVVADV
ADKIAVMYGGRIVETAPVHEIYSRPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPNLLNIPSGCAFNPRCPKAQDICRTD
VPVLHPVTEQDGTELPGRGSACHFWKEQIHG

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=787263 OG299_RS14965 WP_266625823.1 3366860..3367915(-) (amiE) [Streptomyces sp. NBC_01296]
TTGACCATCATCGACAAGACCTCGAACGTCCCCGCTCCGCGCTCCGCGCCGGAGGGGACCCCCCTGCTCGAAGTGCGCGA
CCTGCACGTCGAGTTCCACACCCGCGACGGTGTCGCCAAGGCCGTCAACGGCGTCTCGTACTCCGTGAACGCCGGCGAGA
CCCTCGCGGTCCTCGGCGAGTCCGGTTCGGGCAAGTCCGTGACGGCGCAGGCCATCATGGGCATCCTCGACATGCCGCCC
GGCAAGATCGCGGGCGGTGAGATCCTCTTCCAGGGCACGGACCTGCTCAAGCTCCCGGCCGAGGAGTACCGCAAGGTCCG
CGGTTCGAAGATCGCCATGATCTTCCAGGACGCCCTGTCCTCGCTGAACCCGGTGCACACCGTCGGCGCCCAGCTCGGCG
AGATGTTCCGAGTCCACCGCGGGATGTCCAAGAAGGACGCCACGGCCAAGGCCATCGAGCTCATGGACCGCGTGAAGATC
CCCGCCGCCAAGGCGCGCGTGGGCGACTACCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCCATGGC
GATGGCCCTCGAGCCGGACCTGATCATCGCCGACGAGCCGACCACGGCTCTCGACGTGACGGTCCAGGCCCAGGTCATGG
ACCTGCTCGCGGAGCTCCAGCGCGAGATGAACATGGGCCTGATCCTGATCACCCACGACCTCGGCGTCGTCGCCGACGTC
GCGGACAAGATCGCCGTCATGTACGGCGGCCGGATCGTCGAGACCGCCCCGGTCCACGAGATCTACAGCCGCCCCGCGCA
CCCGTACACCCGCGGTCTGCTCGACTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCTCTACGCGATCAAGGGCCTGC
CGCCCAACCTGCTGAACATCCCGTCGGGCTGCGCCTTCAACCCGCGCTGCCCCAAGGCGCAGGACATCTGCCGCACCGAC
GTGCCGGTCCTGCACCCGGTGACCGAGCAGGACGGCACCGAGCTGCCCGGCCGCGGCAGCGCGTGCCACTTCTGGAAGGA
GCAGATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(43-201)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(253-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

50.676

84.33

0.427
  amiE Streptococcus thermophilus LMG 18311

50

84.33

0.422
  amiE Streptococcus thermophilus LMD-9

50

84.33

0.422
  oppD Streptococcus mutans UA159

47.727

87.749

0.419