Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PSR14_RS22930 Genome accession   NZ_CP117702
Coordinates   4327458..4329794 (-) Length   778 a.a.
NCBI ID   WP_098487096.1    Uniprot ID   -
Organism   Bacillus sp. A01H     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4322458..4334794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR14_RS22905 (PSR14_22890) - 4325120..4325464 (+) 345 WP_000209473.1 PH domain-containing protein -
  PSR14_RS22910 (PSR14_22895) - 4325503..4326570 (-) 1068 WP_000793118.1 AI-2E family transporter -
  PSR14_RS22915 (PSR14_22900) - 4326747..4326959 (+) 213 WP_000242543.1 hypothetical protein -
  PSR14_RS22920 (PSR14_22905) - 4326995..4327123 (-) 129 WP_001053553.1 YrzQ family protein -
  PSR14_RS22925 (PSR14_22910) - 4327142..4327330 (-) 189 WP_000469281.1 hypothetical protein -
  PSR14_RS22930 (PSR14_22915) recD2 4327458..4329794 (-) 2337 WP_098487096.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PSR14_RS22935 (PSR14_22920) - 4329891..4330550 (-) 660 WP_000066390.1 tetratricopeptide repeat protein -
  PSR14_RS22940 (PSR14_22925) mnmA 4330660..4331775 (-) 1116 WP_001038008.1 tRNA 2-thiouridine(34) synthase MnmA -
  PSR14_RS22945 (PSR14_22930) - 4331792..4332937 (-) 1146 WP_000439903.1 cysteine desulfurase family protein -
  PSR14_RS22950 (PSR14_22935) cymR 4332973..4333389 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87433.92 Da        Isoelectric Point: 5.2015

>NTDB_id=787144 PSR14_RS22930 WP_098487096.1 4327458..4329794(-) (recD2) [Bacillus sp. A01H]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIVGCIETMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGMLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=787144 PSR14_RS22930 WP_098487096.1 4327458..4329794(-) (recD2) [Bacillus sp. A01H]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACGTTGACAGGTCATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACGAAAGCCGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTAGATCATCTCGGAGAACATGCTATTTCTAAAATTATGGATG
ATCCTGAGGCTTTAAATGGTGTTGTCAACAAGCAAAAAGCACAAGAAATTTATGAGACAATTGTTGAACATCAAGGGCTA
GAGAAAGTAATGAGCTTTTTAAATGGCTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTAATTCGTAATAACCCGTACCAACTTATTGAAGAAGTGGACGGAATTGGTTTTGGAAGAGCGGATGATA
TAGGGCGTGCGTTAGGGATATCGGGTAATCACGACGACCGTGTACGCGCAGGATGTTTTTACACGTTAGAGAATGTCTCA
TTACAACTTGGTCACGTCTATATGAGGAAAGACCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAGGAAGATATTGTAGGCTGTATTGAAACGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAGCGAGTGT
ATTTAGCAACGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCCATTCGCAGGCTTATGAATCAAGAAGAAACACCTTCA
TTTCCAGAGGCAGAAGTGTTAAAAACATTAGGTGAAATTGAAGAACAACTGAACGTACAATATGCACCGTTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATATAGTGATGATAATCCATTTCCGATA
TTATTAACGGCTCCAACAGGAAGGGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCCGAAGGGTCTTTCCAACGGAATGAAACAGATCCGGTACAAGGGAAATTACTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACTAACATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTACCATCTGTAGGACCTGGACAAGTATTAAAAGATTTATTGAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAGATTTATCGTCAAGCGGAAGGTTCATCAGTAATTCAACTTGCCCATGCGATAAAAAATGGAATGCTCCCACCAG
ATTTAGCGCAAAACCAAAAAGATCGTTCATTTATCGGTTGTACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGT
GAGAATGCGAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGACCGGCGGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTCTTGCAACTCGTTAATCAGCCGGAGAGTCAAGTTTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAACCAGATTTAAATCAAATTACACATGCGTATTGTTGTTCCATTCATAAATCGCAAGGTAGTGAGTTTCCGATTGTAA
TTATGCCGATAGTAAAAAGTTATAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCTGCTTTTCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TAGCCGATTGCAAGAATCACAAGGAGAAGTACAGATGGTAACGGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.016

100

0.58