Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | PSR14_RS19705 | Genome accession | NZ_CP117702 |
| Coordinates | 3752647..3753426 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus sp. A01H | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3723530..3781039 | 3752647..3753426 | within | 0 |
Gene organization within MGE regions
Location: 3723530..3781039
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSR14_RS19575 (PSR14_19570) | dpaB | 3724485..3725084 (-) | 600 | WP_001049480.1 | dipicolinate synthase subunit B | - |
| PSR14_RS19580 (PSR14_19575) | dpaA | 3725081..3725983 (-) | 903 | WP_000954725.1 | dipicolinic acid synthetase subunit A | - |
| PSR14_RS19585 (PSR14_19580) | - | 3726221..3726472 (-) | 252 | WP_001239753.1 | YlmC/YmxH family sporulation protein | - |
| PSR14_RS19590 (PSR14_19585) | - | 3726598..3727839 (-) | 1242 | WP_000592994.1 | pitrilysin family protein | - |
| PSR14_RS19595 (PSR14_19590) | - | 3727926..3728825 (-) | 900 | WP_000857421.1 | polysaccharide deacetylase family protein | - |
| PSR14_RS19600 (PSR14_19595) | pnp | 3728978..3731116 (-) | 2139 | WP_000076746.1 | polyribonucleotide nucleotidyltransferase | - |
| PSR14_RS19605 (PSR14_19600) | rpsO | 3731277..3731546 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| PSR14_RS19610 (PSR14_19605) | ribF | 3731647..3732618 (-) | 972 | WP_000766710.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| PSR14_RS19615 (PSR14_19610) | truB | 3732662..3733585 (-) | 924 | WP_000399341.1 | tRNA pseudouridine(55) synthase TruB | - |
| PSR14_RS19620 (PSR14_19615) | rbfA | 3733672..3734028 (-) | 357 | WP_000776443.1 | 30S ribosome-binding factor RbfA | - |
| PSR14_RS19625 (PSR14_19620) | - | 3734044..3734325 (-) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| PSR14_RS19630 (PSR14_19625) | infB | 3734322..3736382 (-) | 2061 | WP_000036342.1 | translation initiation factor IF-2 | - |
| PSR14_RS19635 (PSR14_19630) | - | 3736387..3736698 (-) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| PSR14_RS19640 (PSR14_19635) | rnpM | 3736699..3736971 (-) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| PSR14_RS19645 (PSR14_19640) | nusA | 3736983..3738089 (-) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| PSR14_RS19650 (PSR14_19645) | rimP | 3738107..3738577 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| PSR14_RS19655 (PSR14_19650) | - | 3738910..3743211 (-) | 4302 | WP_000059980.1 | PolC-type DNA polymerase III | - |
| PSR14_RS19660 (PSR14_19655) | - | 3743336..3745036 (-) | 1701 | WP_098486974.1 | proline--tRNA ligase | - |
| PSR14_RS19665 (PSR14_19660) | rseP | 3745146..3746402 (-) | 1257 | WP_001090249.1 | RIP metalloprotease RseP | - |
| PSR14_RS19670 (PSR14_19665) | dxr | 3746419..3747561 (-) | 1143 | WP_000790362.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| PSR14_RS19675 (PSR14_19670) | cdsA | 3747585..3748376 (-) | 792 | WP_000813584.1 | phosphatidate cytidylyltransferase | - |
| PSR14_RS19680 (PSR14_19675) | uppS | 3748394..3749170 (-) | 777 | WP_000971301.1 | isoprenyl transferase | - |
| PSR14_RS19685 (PSR14_19680) | frr | 3749256..3749813 (-) | 558 | WP_000531500.1 | ribosome recycling factor | - |
| PSR14_RS19690 (PSR14_19685) | pyrH | 3749816..3750538 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| PSR14_RS19695 (PSR14_19690) | tsf | 3750605..3751492 (-) | 888 | WP_001018580.1 | translation elongation factor Ts | - |
| PSR14_RS19700 (PSR14_19695) | rpsB | 3751596..3752297 (-) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| PSR14_RS19705 (PSR14_19700) | codY | 3752647..3753426 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| PSR14_RS19710 (PSR14_19705) | hslU | 3753504..3754895 (-) | 1392 | WP_000550081.1 | ATP-dependent protease ATPase subunit HslU | - |
| PSR14_RS19715 (PSR14_19710) | hslV | 3754918..3755460 (-) | 543 | WP_000526271.1 | ATP-dependent protease proteolytic subunit HslV | - |
| PSR14_RS19720 (PSR14_19715) | xerC | 3755503..3756402 (-) | 900 | WP_001101228.1 | tyrosine recombinase XerC | - |
| PSR14_RS19725 (PSR14_19720) | trmFO | 3756468..3757772 (-) | 1305 | WP_002028254.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| PSR14_RS19730 (PSR14_19725) | topA | 3757823..3759901 (-) | 2079 | WP_001286973.1 | type I DNA topoisomerase | - |
| PSR14_RS19735 (PSR14_19730) | dprA | 3760046..3760915 (-) | 870 | WP_000818026.1 | DNA-processing protein DprA | - |
| PSR14_RS19740 (PSR14_19735) | sucD | 3761003..3761905 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| PSR14_RS19745 (PSR14_19740) | sucC | 3761925..3763085 (-) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| PSR14_RS19750 (PSR14_19745) | rnhB | 3763279..3764052 (-) | 774 | WP_001174725.1 | ribonuclease HII | - |
| PSR14_RS19755 (PSR14_19750) | ylqF | 3764104..3764994 (-) | 891 | WP_000236700.1 | ribosome biogenesis GTPase YlqF | - |
| PSR14_RS19760 (PSR14_19755) | lepB | 3765015..3765566 (-) | 552 | WP_000711857.1 | signal peptidase I | - |
| PSR14_RS19765 (PSR14_19760) | rplS | 3765668..3766012 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| PSR14_RS19770 (PSR14_19765) | trmD | 3766159..3766893 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| PSR14_RS19775 (PSR14_19770) | rimM | 3766893..3767408 (-) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| PSR14_RS19780 (PSR14_19775) | - | 3767529..3767756 (-) | 228 | WP_000737403.1 | KH domain-containing protein | - |
| PSR14_RS19785 (PSR14_19780) | rpsP | 3767771..3768043 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| PSR14_RS19790 (PSR14_19785) | ffh | 3768144..3769493 (-) | 1350 | WP_000863461.1 | signal recognition particle protein | - |
| PSR14_RS19795 (PSR14_19790) | - | 3769506..3769838 (-) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| PSR14_RS19800 (PSR14_19795) | ftsY | 3769972..3770961 (-) | 990 | WP_000007646.1 | signal recognition particle-docking protein FtsY | - |
| PSR14_RS19805 (PSR14_19800) | smc | 3770977..3774546 (-) | 3570 | WP_000479000.1 | chromosome segregation protein SMC | - |
| PSR14_RS19810 (PSR14_19805) | rncS | 3774694..3775431 (-) | 738 | WP_001146876.1 | ribonuclease III | - |
| PSR14_RS19815 (PSR14_19810) | acpP | 3775490..3775723 (-) | 234 | WP_000786062.1 | acyl carrier protein | - |
| PSR14_RS19820 (PSR14_19815) | fabG | 3775793..3776533 (-) | 741 | WP_000911784.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| PSR14_RS19825 (PSR14_19820) | fabD | 3776533..3777477 (-) | 945 | WP_000516951.1 | ACP S-malonyltransferase | - |
| PSR14_RS19830 (PSR14_19825) | plsX | 3777492..3778484 (-) | 993 | WP_098486973.1 | phosphate acyltransferase PlsX | - |
| PSR14_RS19835 (PSR14_19830) | fapR | 3778481..3779074 (-) | 594 | WP_000747352.1 | transcription factor FapR | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=787137 PSR14_RS19705 WP_000421288.1 3752647..3753426(-) (codY) [Bacillus sp. A01H]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=787137 PSR14_RS19705 WP_000421288.1 3752647..3753426(-) (codY) [Bacillus sp. A01H]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTACTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTACTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |