Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   PSR59_RS08695 Genome accession   NZ_CP117692
Coordinates   1763869..1764693 (+) Length   274 a.a.
NCBI ID   WP_273744847.1    Uniprot ID   A0AAQ2XHG9
Organism   Ligilactobacillus ruminis strain CACC888     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1758869..1769693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR59_RS08670 (PSR59_08670) - 1759259..1759441 (-) 183 WP_014073507.1 YjzD family protein -
  PSR59_RS08675 (PSR59_08675) - 1759605..1762967 (+) 3363 WP_273744845.1 DNA polymerase III subunit alpha -
  PSR59_RS08685 (PSR59_08685) - 1763248..1763406 (+) 159 WP_080926228.1 methyl-accepting chemotaxis protein -
  PSR59_RS08690 (PSR59_08690) - 1763568..1763729 (+) 162 WP_273744846.1 hypothetical protein -
  PSR59_RS08695 (PSR59_08695) endA 1763869..1764693 (+) 825 WP_273744847.1 DNA/RNA non-specific endonuclease Machinery gene
  PSR59_RS08700 (PSR59_08700) - 1764783..1765430 (+) 648 WP_273744848.1 nitroreductase family protein -
  PSR59_RS08705 (PSR59_08705) - 1765487..1765708 (+) 222 WP_273744849.1 hypothetical protein -
  PSR59_RS08710 (PSR59_08710) - 1765843..1767087 (+) 1245 WP_014073504.1 RNA-guided endonuclease TnpB family protein -
  PSR59_RS08715 (PSR59_08715) - 1767210..1767446 (+) 237 WP_273744850.1 hypothetical protein -
  PSR59_RS08720 (PSR59_08720) - 1767400..1767582 (+) 183 WP_241531265.1 hypothetical protein -
  PSR59_RS08725 (PSR59_08725) - 1767940..1769178 (-) 1239 WP_273744851.1 IS256 family transposase -

Sequence

Protein


Download         Length: 274 a.a.        Molecular weight: 30509.90 Da        Isoelectric Point: 9.7342

>NTDB_id=787039 PSR59_RS08695 WP_273744847.1 1763869..1764693(+) (endA) [Ligilactobacillus ruminis strain CACC888]
MVKRRKQNKSFATLIIAIGLVLLSWTAFGKKIGLDEWLNSGGQSQTSRVQNDESTPERHLAESVLSDSIRQRLGQKIEWN
GHGAFIINDNKTDLNANVSSAPYAVNRKETGAMIGDAWLNKTTRQYKNRSETGQGRTDWRPQGFKQKLDLSGRYSHAYDR
GHLLAYSLVGGLRGFDASEANPDNIATQTAWANEAQSANSTGQNYYEGLVRKALDQNERVRYRVTDLFEEGNLVPSGAHI
EAKSRSGSLEFNVFVPNVQKGIEINYQTGDVSVK

Nucleotide


Download         Length: 825 bp        

>NTDB_id=787039 PSR59_RS08695 WP_273744847.1 1763869..1764693(+) (endA) [Ligilactobacillus ruminis strain CACC888]
ATGGTCAAAAGAAGAAAACAAAACAAAAGCTTTGCGACCCTGATCATTGCCATCGGGTTGGTCTTGCTTAGCTGGACTGC
CTTCGGCAAAAAAATCGGCTTGGACGAGTGGCTGAATTCAGGAGGTCAATCTCAAACAAGCCGTGTCCAAAACGACGAAA
GCACACCGGAAAGACATCTTGCGGAAAGCGTTTTGAGCGATTCGATCAGACAAAGACTCGGACAAAAAATCGAGTGGAAC
GGACATGGAGCCTTCATCATCAATGATAACAAGACTGATTTGAATGCCAATGTTTCAAGTGCTCCGTATGCGGTCAACAG
AAAAGAAACCGGGGCGATGATCGGGGATGCCTGGCTGAACAAGACGACCAGACAATACAAAAATCGCAGCGAAACCGGCC
AGGGCAGGACCGACTGGCGCCCCCAAGGCTTTAAACAAAAACTTGATTTGAGCGGTCGCTACTCTCATGCTTACGACAGA
GGTCACTTGCTGGCTTATTCTTTGGTCGGAGGACTGAGAGGGTTTGACGCATCTGAAGCAAATCCCGACAATATCGCAAC
GCAGACGGCCTGGGCAAATGAGGCCCAAAGCGCAAATTCTACCGGTCAAAACTACTATGAAGGACTTGTCCGAAAAGCGC
TTGATCAAAATGAACGGGTTCGCTATCGCGTTACCGATTTGTTTGAAGAAGGCAATCTGGTTCCTTCCGGGGCTCACATT
GAGGCCAAAAGCAGATCGGGATCGCTTGAATTCAACGTGTTCGTGCCAAACGTTCAAAAGGGCATCGAAATCAATTACCA
AACCGGAGACGTCAGCGTCAAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(119-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.268

81.752

0.493
  endA Streptococcus pneumoniae D39

60.268

81.752

0.493
  endA Streptococcus pneumoniae R6

60.268

81.752

0.493
  endA Streptococcus pneumoniae TIGR4

60.268

81.752

0.493