Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG472_RS16735 Genome accession   NZ_CP130715
Coordinates   3475451..3477373 (+) Length   640 a.a.
NCBI ID   WP_401601859.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00207     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3470451..3482373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG472_RS16720 (OG472_16640) - 3471723..3472022 (+) 300 WP_401601853.1 YtxH domain-containing protein -
  OG472_RS16725 (OG472_16645) - 3472121..3473602 (+) 1482 WP_405830025.1 FGGY family carbohydrate kinase -
  OG472_RS16730 (OG472_16650) rcrP 3473721..3475454 (+) 1734 WP_405830027.1 ABC transporter ATP-binding protein Regulator
  OG472_RS16735 (OG472_16655) rcrQ 3475451..3477373 (+) 1923 WP_401601859.1 ABC transporter ATP-binding protein Regulator
  OG472_RS16740 (OG472_16660) - 3477491..3478012 (+) 522 WP_405830030.1 GNAT family N-acetyltransferase -
  OG472_RS16745 (OG472_16665) rpoS 3478066..3479133 (-) 1068 WP_383568551.1 RNA polymerase sigma factor Regulator
  OG472_RS16750 (OG472_16670) - 3479381..3480382 (+) 1002 WP_405830031.1 hypothetical protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68829.33 Da        Isoelectric Point: 5.2933

>NTDB_id=786990 OG472_RS16735 WP_401601859.1 3475451..3477373(+) (rcrQ) [Streptomyces sp. NBC_00207]
MSGPGGRMMMGPAQRSMDFKGSGKRLLGQLAHDRAKIWGMVAAVVGSVGCAVVGPKILGEATDLVFAGIVGREMPAGITK
QQALEGLRARGQDGMADMLSGTDFTPGQGIDFGAVGVVALWALVVFTLAGLLMLVATRLSNHVMNGTVYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMFWISPLLALVALLTVPLSVFVAAKIGKKS
QPQFVAQWKTTGALNAHVEEMYSGHSLVKVFGRQKESAAVFAEQNEALYRASFKAQLVSGIMQPVMFFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDASEQEADAEVPERPEELRGQVTFDKV
AFRYEPDKPLIENLSLSVDPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRAGIGMVLQDTWL
FGGTIAENIAYGASRKVTRAEIEEAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLASDGAYARLYAAQFAQAVVEVE

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=786990 OG472_RS16735 WP_401601859.1 3475451..3477373(+) (rcrQ) [Streptomyces sp. NBC_00207]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGCCCAGCGGTCCATGGACTTCAAGGGCTCGGGCAAGCGGTTGCT
GGGCCAGCTCGCGCACGACCGCGCCAAGATCTGGGGCATGGTCGCGGCCGTGGTCGGCAGCGTCGGCTGCGCGGTGGTCG
GCCCGAAGATCCTGGGCGAGGCCACCGACCTGGTCTTCGCCGGGATCGTGGGCCGGGAGATGCCGGCCGGGATCACGAAG
CAGCAGGCCCTGGAGGGGCTGCGCGCCAGGGGTCAGGACGGCATGGCGGACATGCTCTCCGGCACCGACTTCACTCCGGG
GCAGGGCATCGACTTCGGCGCGGTCGGGGTCGTGGCGCTCTGGGCGCTGGTGGTCTTCACGCTGGCGGGCCTGCTGATGC
TGGTCGCGACCCGGCTGTCGAACCACGTCATGAACGGCACCGTCTACCGGATGCGCGAGGAGCTGCAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCCACCAACGACATCGACAACATCGG
CCAGACGCTCCAGCAGACGATGGGTCAGCTGCTGAACTCGCTGCTGACGATCGTCGGCGTGCTCGCCATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCACTGCTGACCGTGCCTCTCTCGGTCTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGACGACCGGCGCGCTCAACGCCCACGTCGAGGAGATGTACTCGGGGCACAGCCT
GGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGCCGTCTTCGCCGAGCAGAACGAGGCCCTCTACCGGGCCTCCTTCA
AGGCGCAGCTGGTCAGCGGCATCATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGATAGCCGTCGTC
GGCGGGCTCCGGGTCGCCTCCGGCACCCTGTCGATCGGTGACGTGCAGGCTTTCATCCAGTACTCGCGGCAGTTCTCCAT
GCCGCTGACGCAGGTCGCCTCGATGGCGAACCTCGTGCAGTCCGGTGTCGCCTCGGCGGAGCGGGTGTACGAGCTGCTGG
ACGCGTCGGAGCAGGAGGCGGACGCCGAGGTTCCGGAGCGTCCGGAGGAGCTGCGCGGCCAGGTCACCTTCGACAAGGTG
GCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGAACCTCTCGCTGTCGGTCGACCCGGGTCACACCGTCGCGATCGT
CGGCCCGACGGGCGCCGGCAAGACGACGCTCGTGAACCTGCTGATGCGGTTCTACGAGGTCACCGGCGGGGAGATCGCCC
TCGACGGGGTGGACATCGCGAAGATGACGCGCGAGGAACTGCGCGCGGGCATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACCATCGCGGAGAACATCGCCTACGGTGCCTCGCGCAAGGTCACGCGCGCCGAGATCGAGGAGGCGGCGCG
GGCCGCGCACGCGGACCGTTTCATCCGCACCCTGCCGGACGGCTACGACACCGTCCTGGACGACGAGGGCGCGGGCGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCCACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTCGCGCACGGCCGTACGTCCTTCGTGAT
CGCGCACCGGCTCTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAGCGGCTCGATCGTGGAGCAGGGCACGC
ACGAGGAACTGCTGGCGTCGGACGGTGCGTACGCACGGCTGTACGCGGCACAGTTCGCGCAGGCGGTCGTCGAGGTCGAA
TAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-561)

ABC transporter transmembrane region (ABC_membrane)

(56-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.258

97.031

0.391