Detailed information NTG0786941

Bioinformatically predicted

Overview

• Name: endA
• Type: Machinery gene
• Locus tag: PSR47_RS05375
• Genome accession: NZ_CP117687
• Coordinates: 1103013..1103837 (-)
• Length: 274 a.a.
• NCBI ID: WP_273746807.1
• Uniprot ID: -
• Organism: Ligilactobacillus ruminis strain CACC881
• Function: cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1098013..1108837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSR47_RS05345 (PSR47_05345)	-	1098656..1099894 (+)	1239	WP_273744851.1	IS256 family transposase	-
PSR47_RS05350 (PSR47_05350)	-	1100115..1100297 (-)	183	WP_273747612.1	hypothetical protein	-
PSR47_RS05355 (PSR47_05355)	-	1100230..1100529 (-)	300	WP_273746804.1	endo alpha-1,4 polygalactosaminidase	-
PSR47_RS05360 (PSR47_05360)	-	1100652..1101896 (-)	1245	WP_014073504.1	RNA-guided endonuclease TnpB family protein	-
PSR47_RS05365 (PSR47_05365)	-	1102031..1102228 (-)	198	WP_273746805.1	hypothetical protein	-
PSR47_RS05370 (PSR47_05370)	-	1102311..1102958 (-)	648	WP_273746806.1	nitroreductase family protein	-
PSR47_RS05375 (PSR47_05375)	endA	1103013..1103837 (-)	825	WP_273746807.1	DNA/RNA non-specific endonuclease	Machinery gene
PSR47_RS05380 (PSR47_05380)	-	1103918..1104139 (-)	222	WP_273746808.1	hypothetical protein	-
PSR47_RS05385 (PSR47_05385)	-	1104301..1104459 (-)	159	WP_273746809.1	methyl-accepting chemotaxis protein	-
PSR47_RS05395 (PSR47_05395)	-	1104741..1105889 (-)	1149	WP_273746810.1	OB-fold nucleic acid binding domain-containing protein	-
PSR47_RS05400 (PSR47_05400)	dnaE	1105829..1108102 (-)	2274	WP_273746811.1	DNA polymerase III subunit alpha	-
PSR47_RS05405 (PSR47_05405)	-	1108266..1108448 (+)	183	WP_273746812.1	YjzD family protein	-

Sequence

Protein

• Length: 274 a.a.
• Molecular weight: 30560.90 Da
• Isoelectric Point: 9.5786

>NTDB_id=786941 PSR47_RS05375 WP_273746807.1 1103013..1103837(-) (endA) [Ligilactobacillus ruminis strain CACC881]
MAKRRKQNKSFATLIIAIGLVLLSWTAFGKKIGLDEWLNSEGQSQTSRVQNDESTPERQLAESVLSDSIRQRLGQKIEWN
GHGAFIINDNKTDLNANVSSAPYAVNRKETGAMIGDAWLNKTTRQYKNRSETGQGRTDWRPQGFKQKLDLSGRYSHAYDR
GHLLAYSLVGGLRGFDASESNPDNIATQTAWANEAQSANSTGQNYYEGLVRKALDQNERVRYRVTDLFEEGNLVPSGAHI
EAKSRSGSLEFNVFVPNVQKGIEINYQTGDVSVK

Nucleotide

• Length: 825 bp

>NTDB_id=786941 PSR47_RS05375 WP_273746807.1 1103013..1103837(-) (endA) [Ligilactobacillus ruminis strain CACC881]
ATGGCCAAAAGAAGAAAACAAAACAAAAGCTTTGCGACCCTGATCATTGCCATCGGGTTGGTCCTTCTGAGCTGGACTGC
CTTCGGCAAAAAAATCGGCTTGGACGAGTGGCTGAATTCAGAAGGTCAATCTCAAACAAGCCGCGTCCAAAACGACGAAA
GCACACCGGAAAGACAGCTTGCGGAAAGCGTTTTGAGCGATTCGATCAGACAAAGACTCGGACAAAAAATCGAGTGGAAC
GGACATGGAGCCTTCATCATCAATGATAACAAGACTGATTTGAATGCCAATGTTTCAAGTGCTCCGTATGCGGTCAACAG
AAAAGAAACCGGGGCGATGATCGGGGATGCCTGGCTGAACAAGACGACCAGACAATACAAAAATCGCAGCGAAACCGGCC
AGGGCAGGACCGACTGGCGCCCCCAAGGCTTTAAACAAAAACTTGATTTGAGCGGTCGCTACTCTCATGCTTACGACAGA
GGTCACTTGCTGGCTTATTCTTTGGTCGGGGGACTGAGAGGGTTTGACGCATCTGAATCCAATCCCGACAATATCGCAAC
GCAGACGGCCTGGGCAAATGAGGCCCAAAGCGCAAATTCGACCGGTCAAAACTACTATGAAGGACTTGTCCGAAAAGCGC
TTGATCAAAATGAACGGGTTCGCTATCGCGTTACCGATTTGTTTGAAGAAGGCAATCTGGTTCCTTCCGGGGCGCACATT
GAGGCCAAAAGCAGATCGGGATCGCTTGAATTCAACGTGTTCGTGCCAAACGTTCAAAAGGGCATCGAAATCAATTACCA
AACCGGAGACGTCAGCGTCAAATAA

Domains

Predicted by InterproScan.

• DNA/RNA non-specific endonuclease (Endonuclease_NS) (119-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
endA	Streptococcus pneumoniae Rx1	60.714	81.752	0.496
endA	Streptococcus pneumoniae D39	60.714	81.752	0.496
endA	Streptococcus pneumoniae R6	60.714	81.752	0.496
endA	Streptococcus pneumoniae TIGR4	60.714	81.752	0.496