Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG202_RS16530 Genome accession   NZ_CP130714
Coordinates   3754442..3756175 (+) Length   577 a.a.
NCBI ID   WP_328223007.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00310     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3749442..3761175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG202_RS16495 - 3749686..3750093 (+) 408 Protein_3280 hypothetical protein -
  OG202_RS16500 (OG202_16510) - 3750212..3750643 (+) 432 WP_328223006.1 ester cyclase -
  OG202_RS16520 (OG202_16530) - 3752397..3752702 (+) 306 WP_326582959.1 YtxH domain-containing protein -
  OG202_RS16525 (OG202_16535) - 3752772..3754226 (+) 1455 WP_327729809.1 FGGY family carbohydrate kinase -
  OG202_RS16530 (OG202_16540) rcrP 3754442..3756175 (+) 1734 WP_328223007.1 ABC transporter ATP-binding protein Regulator
  OG202_RS16535 (OG202_16545) rcrQ 3756175..3758109 (+) 1935 WP_328223008.1 ABC transporter ATP-binding protein Regulator
  OG202_RS16540 (OG202_16550) - 3758330..3759652 (-) 1323 WP_327729806.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62955.12 Da        Isoelectric Point: 5.7622

>NTDB_id=786912 OG202_RS16530 WP_328223007.1 3754442..3756175(+) (rcrP) [Streptomyces sp. NBC_00310]
MLIRLLRSHLRPYRTPITLLVLLQFVQTCATLYLPTLNADIIDEGVVEGDTGYILSFGALMIGISLVQVVCNIGAVYYGA
RTAAAVGRDIRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMTFTLVVSAPIMCVGGIVLALGLDVPLSGV
LLAVVPVLGVSVSLIVRRLRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDDYEKDRFRKANVELTDVSLGTGRMLAL
MFPIVMTVINLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMMPRAEVCAERIQEVLDTGTSVVP
PAEPVRELRRHGFLEVRGAGFRYPGAEEPVLRSIEVAARPGETTAVIGSTGSGKSTLLGLVPRLFDVTDGEVLVDGVDVR
TLDPKLLARTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVERLESGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETADATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=786912 OG202_RS16530 WP_328223007.1 3754442..3756175(+) (rcrP) [Streptomyces sp. NBC_00310]
GTGCTCATACGATTGCTGAGAAGTCATCTTCGTCCCTACCGGACACCGATCACCCTGTTGGTGCTGCTGCAGTTCGTGCA
GACGTGCGCCACGCTCTACCTGCCCACGCTGAACGCGGACATCATCGACGAGGGCGTGGTGGAGGGGGACACGGGTTACA
TCCTGTCCTTCGGCGCGCTGATGATCGGTATCTCGTTGGTGCAGGTCGTCTGCAACATCGGGGCCGTGTACTACGGCGCC
CGCACCGCCGCGGCGGTCGGCCGGGACATCCGGGCCGCCGTGTTCGACCGGGTGCAGTCGTTCTCGGCGCGTGAGGTCGG
TCACTTCGGTGCTCCGTCGCTGATCACGCGGACGACGAACGATGTGCAGCAGGTGCAGATGCTGGTGCTCATGACGTTCA
CGCTGGTGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGTGCTGGCGCTGGGGCTGGACGTGCCGTTGTCGGGGGTG
CTCCTCGCCGTCGTCCCGGTGCTCGGTGTTTCCGTCAGCCTGATCGTGCGCCGGCTGCGCCCCCTGTTCCGCACGATGCA
GGAGCGGCTGGACACCGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGGGTCATCCGGGCCTTCGTGCGGGACG
ACTACGAGAAGGATCGGTTCCGGAAGGCGAACGTCGAGCTGACGGATGTATCCCTGGGAACCGGGCGGATGCTCGCGCTG
ATGTTCCCGATCGTGATGACGGTCATCAACCTCTCGTCGATCGCGGTGGTGTGGTTCGGTGCCCATCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTCACCGCTTTCCTCGCCTATCTGATGCAGATCGTCATGGCTGTGATGATGGCCACGTTCA
TGTTCATGATGATGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCGGGACGAGTGTGGTGCCG
CCGGCCGAGCCCGTACGGGAGCTGCGGCGGCACGGGTTCCTCGAGGTACGGGGTGCGGGCTTCCGCTATCCGGGTGCCGA
GGAGCCGGTGCTCCGGTCGATCGAGGTGGCGGCGCGGCCCGGTGAGACGACCGCCGTCATCGGGTCCACGGGCAGCGGCA
AGTCGACGCTCCTCGGGCTGGTCCCCCGGCTGTTCGACGTCACCGACGGCGAGGTGCTGGTGGACGGCGTCGACGTACGG
ACGCTCGATCCGAAGCTGCTGGCCAGGACGGTGAGCCTGGTGCCGCAGAAGCCGTACCTCTTCTCGGGGACCGTGGCGAC
GAACCTGCGGTACGGCAATCCGGACGCCACCGACGAGGAGTTGTGGCACGCGTTGGAGGTGGCGCAGGCCAAGGAGTTCG
TCGAGCGGCTGGAGAGCGGGCTGGACTCGCCCATCGCGCAGGGCGGGACGAACGTCTCCGGCGGGCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGCCCGGAGATCTATCTGTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACCGA
CGCCGCCCTGCGCGCCGCGCTGGCGCGGGAGACCGCCGACGCGACCGTCGTGATCGTGGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGACGCCACCACGAGCTGATGGCCGACAAC
GAGACCTACCGGGAGATCGTCCTCTCCCAGCTCACGGAAGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.832

100

0.392