Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   PL321_RS13590 Genome accession   NZ_CP117677
Coordinates   1923833..1925008 (-) Length   391 a.a.
NCBI ID   WP_337961172.1    Uniprot ID   -
Organism   Caloramator sp. mosi_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1918833..1930008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PL321_RS13550 (PL321_13565) - 1919093..1919392 (-) 300 WP_273962381.1 hypothetical protein -
  PL321_RS13555 (PL321_13570) - 1919389..1919592 (-) 204 WP_273962382.1 MBL fold metallo-hydrolase -
  PL321_RS13560 (PL321_13575) dtd 1919604..1920052 (-) 449 Protein_2687 D-aminoacyl-tRNA deacylase -
  PL321_RS13565 (PL321_13580) - 1920063..1922232 (-) 2170 Protein_2688 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  PL321_RS13570 (PL321_13585) - 1922339..1922857 (-) 519 WP_273962383.1 adenine phosphoribosyltransferase -
  PL321_RS13575 (PL321_13590) - 1922860..1923129 (-) 270 WP_273962384.1 hypothetical protein -
  PL321_RS13580 (PL321_13595) - 1923138..1923281 (-) 144 WP_273962385.1 hypothetical protein -
  PL321_RS13585 (PL321_13600) - 1923384..1923794 (-) 411 WP_273962386.1 hypothetical protein -
  PL321_RS13590 (PL321_13605) recJ 1923833..1925008 (-) 1176 WP_337961172.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  PL321_RS13595 (PL321_13610) - 1924972..1925217 (-) 246 WP_273962387.1 hypothetical protein -
  PL321_RS13600 (PL321_13615) - 1925329..1925562 (-) 234 WP_337961173.1 hypothetical protein -
  PL321_RS13605 (PL321_13620) secF 1925511..1926191 (-) 681 WP_273962388.1 protein translocase subunit SecF -
  PL321_RS13610 (PL321_13625) secD 1926106..1927443 (-) 1338 WP_273962389.1 protein translocase subunit SecD -
  PL321_RS13615 (PL321_13630) - 1927462..1928120 (-) 659 Protein_2698 HD domain-containing protein -
  PL321_RS13620 (PL321_13635) - 1928220..1928720 (-) 501 WP_273962390.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 44003.67 Da        Isoelectric Point: 4.5656

>NTDB_id=786901 PL321_RS13590 WP_337961172.1 1923833..1925008(-) (recJ) [Caloramator sp. mosi_1]
MVIYGDYDVDGITSTSILIRALRKLGVDVSFYIPDRLNEGYGINKDAIDYIKQLATDLIITVDCGITAVEEVKYARELGM
DIIITDHHECKEIIPDTYVINPKRHDCTYPNKNLAGCGVAFKLVQALWMKYNLSGFEELLDICAIGTIADIVEITGENRI
IVSQGLKKLQNSEKCGIKALKNVAGITDVTSYSIAFQIAPRINAVGRLSDARIAVELFTTTDEDKAMQIAKYLDQENRSR
QKIEEEILNEALIMIQNNFDLSNDRVIVLSSPFWHVGVVGIVASRLVERFHRPVILLCEDKEGFCKGSGRSIEGFNLFEN
LLKCEDILVKFGGHELAAGLTIEKSKINELIERLNEYAKEMDVEMFLPKLYIDLEMTTEDITFETAEEIKN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=786901 PL321_RS13590 WP_337961172.1 1923833..1925008(-) (recJ) [Caloramator sp. mosi_1]
ATTGTTATATACGGAGACTATGATGTTGACGGTATAACCAGTACATCAATACTTATAAGAGCCTTAAGAAAATTAGGGGT
AGATGTGTCCTTTTATATTCCTGATAGATTAAACGAAGGATATGGAATAAATAAAGATGCAATAGATTACATTAAACAGC
TTGCAACAGATTTAATTATAACTGTTGACTGTGGAATTACTGCAGTAGAAGAAGTTAAGTATGCAAGGGAACTTGGAATG
GATATTATAATTACTGATCATCACGAGTGTAAGGAGATAATACCAGATACATATGTTATTAATCCTAAAAGACACGACTG
TACATATCCAAATAAAAATTTAGCTGGATGCGGAGTTGCCTTTAAATTAGTTCAAGCACTTTGGATGAAGTATAATTTGT
CTGGATTTGAAGAACTTTTAGATATATGTGCAATAGGTACAATTGCAGATATTGTTGAAATTACAGGAGAAAATAGGATT
ATTGTAAGTCAAGGTCTTAAAAAGCTACAAAACAGTGAAAAATGTGGCATAAAGGCATTAAAGAATGTAGCTGGTATAAC
AGATGTTACATCATATAGCATAGCCTTTCAAATTGCACCAAGAATTAATGCAGTTGGAAGATTAAGTGATGCAAGAATAG
CAGTTGAACTATTTACAACAACTGATGAGGATAAAGCAATGCAAATTGCAAAATATCTTGACCAAGAAAATAGAAGTCGA
CAAAAGATAGAAGAAGAAATATTAAACGAAGCTTTAATTATGATACAAAATAATTTTGATTTATCAAACGATAGAGTAAT
TGTTCTTTCCTCACCATTTTGGCACGTTGGTGTCGTTGGAATAGTTGCATCAAGATTGGTAGAACGTTTTCATAGACCAG
TAATTCTACTTTGTGAAGATAAGGAAGGTTTTTGTAAAGGCTCAGGTAGAAGTATAGAAGGATTTAATCTATTTGAAAAT
CTGTTAAAATGTGAAGATATATTAGTCAAATTTGGAGGACACGAATTAGCGGCAGGTTTAACAATAGAAAAGTCAAAGAT
TAATGAGCTCATAGAAAGACTTAATGAATATGCAAAAGAGATGGACGTTGAGATGTTCTTACCAAAGTTATATATTGATT
TAGAGATGACTACTGAAGATATAACCTTTGAGACAGCAGAGGAAATAAAAAATTAG

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(237-357)

DHH family (DHH)

(2-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

48.101

100

0.486