Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   OO714_RS00280 Genome accession   NZ_AP025740
Coordinates   60863..62128 (+) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain ATCC 19606     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55863..67128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO714_RS00250 (KAMO5_00490) mutY 56032..57066 (-) 1035 WP_001113869.1 A/G-specific adenine glycosylase -
  OO714_RS00255 (KAMO5_00500) - 57207..57569 (-) 363 WP_000130110.1 HIT family protein -
  OO714_RS00260 (KAMO5_00510) - 57755..58492 (-) 738 WP_000100765.1 dienelactone hydrolase family protein -
  OO714_RS00265 (KAMO5_00520) - 58664..58822 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  OO714_RS00270 (KAMO5_00530) - 59017..59475 (+) 459 WP_000102818.1 YcgN family cysteine cluster protein -
  OO714_RS00275 (KAMO5_00540) - 59588..60757 (+) 1170 WP_074162152.1 PQQ-dependent sugar dehydrogenase -
  OO714_RS00280 (KAMO5_00550) rarA 60863..62128 (+) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  OO714_RS00285 (KAMO5_00560) - 62144..62983 (-) 840 WP_000349489.1 formate/nitrite transporter family protein -
  OO714_RS00290 (KAMO5_00570) - 63269..63472 (-) 204 WP_000418560.1 hypothetical protein -
  OO714_RS00295 (KAMO5_00580) purC 63665..64384 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  OO714_RS00300 (KAMO5_00590) - 64422..65024 (-) 603 WP_001177091.1 hypothetical protein -
  OO714_RS00305 (KAMO5_00600) dapA 65040..65933 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  OO714_RS00310 (KAMO5_00610) pncA 66263..66907 (+) 645 WP_001985076.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=78677 OO714_RS00280 WP_001285409.1 60863..62128(+) (rarA) [Acinetobacter baumannii strain ATCC 19606]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=78677 OO714_RS00280 WP_001285409.1 60863..62128(+) (rarA) [Acinetobacter baumannii strain ATCC 19606]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCAGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAAACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAATATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCTCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCAGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCCGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAT
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTCTAGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGATTATTTGCCGCCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387

Multiple sequence alignment