Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   Q5R05_RS07550 Genome accession   NZ_CP130703
Coordinates   1489492..1491897 (-) Length   801 a.a.
NCBI ID   WP_135197743.1    Uniprot ID   -
Organism   Leuconostoc carnosum strain AMS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1484492..1496897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5R05_RS07530 (Q5R05_07530) coaE 1485564..1486184 (-) 621 WP_019040811.1 dephospho-CoA kinase -
  Q5R05_RS07535 (Q5R05_07535) - 1486184..1486939 (-) 756 WP_135197741.1 DUF975 family protein -
  Q5R05_RS07540 (Q5R05_07540) mutM 1486986..1487819 (-) 834 WP_014974788.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  Q5R05_RS07545 (Q5R05_07545) - 1488007..1489311 (-) 1305 WP_135197742.1 NCS2 family permease -
  Q5R05_RS07550 (Q5R05_07550) mutS/mutS2 1489492..1491897 (-) 2406 WP_135197743.1 endonuclease MutS2 Machinery gene
  Q5R05_RS07555 (Q5R05_07555) - 1491950..1492471 (-) 522 WP_135197744.1 CvpA family protein -
  Q5R05_RS07560 (Q5R05_07560) zapA 1492468..1492872 (-) 405 WP_014974792.1 cell division protein ZapA -
  Q5R05_RS07565 (Q5R05_07565) rnhC 1492947..1493873 (+) 927 WP_135197745.1 ribonuclease HIII -
  Q5R05_RS07570 (Q5R05_07570) - 1494088..1494636 (-) 549 WP_135197746.1 NADPH-dependent FMN reductase -
  Q5R05_RS07575 (Q5R05_07575) thiE 1494944..1495579 (-) 636 WP_223822776.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 88331.49 Da        Isoelectric Point: 6.2303

>NTDB_id=786646 Q5R05_RS07550 WP_135197743.1 1489492..1491897(-) (mutS/mutS2) [Leuconostoc carnosum strain AMS1]
MNKKVLQTLEYDKIKLQLHAFLLTPIGRQEADALAPETDIDRINYWLLETADGVLIDRLKGGLPISKLADITPHLKRLNI
NASLSATELSEVSTVLRNTSTIANFFEQLQDEVIGESLQVLPEQAQNLEILQDVTRQIQIAIDISGRINDEASFELKAIR
GKIIGHENAVKHQMQDYTRGKTAQYLSDPIVTIRADRYVLPVKAEYRNQFGGVVHDQSQTGQTLYIEPQAVVELNNKLSE
LRVKEAVEEQHVLQELSAALAPHTVEIANNVKIIGHFDFINAKSRLAARLDAMQPTVNPNNHVNLQQAWHPLLDKKIAVA
NDIVLGEDYKAIIITGPNTGGKTITIKTLGLLQLMAQSGLFITTKRPSTVGIFNEVFADIGDEQSIEQSLSTFSSHMANI
VSMLDNIDDQTLVIFDELGAGTDPAEGAALAIAILDKVASLGAYVIATTHYPELKLYGYNRPETINASMVFDVETLRPTY
QFMMGVPGQSNALAIAKRLGLGEDVIGAATALTNESDQDLNNMIADLVTKRDQVNKEREILELQLKTTDEQATAFEEKQR
QLEKDRAQIVLDAKNEANHIVASTKKQAEQLISEIRKERLNAGQQTGQFSEQDLQAKKGQLEKLRQNNSLEKNKVLQRAK
RAKALAAGDEILVKSYSQQGTLVKKHSNGQWEVEMGILKMLVDEDDVVKTEATANAQKSKAKQKQRKVVKTKTAGNTVRQ
TASAKLDLRGVRYEAALSELDRYLDTAVLANLGAVEIIHGKGTGALRKGVTEFLRSDRRVKSFHFASANAGGDGATIAEL
A

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=786646 Q5R05_RS07550 WP_135197743.1 1489492..1491897(-) (mutS/mutS2) [Leuconostoc carnosum strain AMS1]
ATGAATAAAAAAGTATTACAAACTTTAGAATATGACAAAATAAAATTGCAATTGCATGCTTTTTTGCTGACACCAATTGG
GCGGCAAGAAGCAGACGCGCTGGCACCTGAAACAGACATCGACAGGATTAATTATTGGCTACTTGAAACGGCTGATGGTG
TTTTAATTGATCGTTTAAAAGGTGGGTTGCCAATTTCTAAACTGGCGGATATTACACCACATTTAAAACGATTAAATATT
AATGCTAGCCTGAGTGCCACTGAGTTATCAGAAGTAAGTACGGTACTACGTAACACAAGCACAATTGCTAATTTTTTTGA
GCAGTTACAAGATGAGGTGATTGGCGAATCATTACAAGTATTACCTGAACAAGCACAAAATCTTGAAATATTACAAGATG
TCACGCGACAAATTCAAATAGCTATTGATATATCGGGGCGAATTAATGATGAAGCCTCCTTTGAATTGAAAGCCATTCGT
GGCAAGATTATTGGTCATGAAAATGCAGTTAAGCATCAGATGCAAGATTATACGCGTGGTAAAACAGCACAGTATTTGAG
CGACCCAATTGTGACTATTCGTGCTGATCGCTATGTGTTACCGGTTAAAGCTGAGTACCGTAATCAGTTTGGCGGTGTTG
TTCATGACCAAAGTCAAACGGGACAAACGCTTTATATTGAGCCACAAGCAGTTGTAGAGTTAAATAATAAGTTAAGCGAA
TTACGTGTTAAAGAAGCGGTTGAAGAGCAACATGTGCTGCAAGAGTTATCTGCTGCTTTAGCACCACATACTGTAGAAAT
AGCTAATAATGTGAAAATTATTGGTCATTTTGATTTTATTAATGCTAAATCCAGATTAGCTGCACGCTTAGATGCCATGC
AGCCTACGGTTAATCCAAATAATCATGTGAATTTGCAACAAGCTTGGCACCCTTTGCTAGATAAAAAAATTGCGGTAGCT
AATGATATTGTTTTAGGTGAAGACTATAAAGCAATTATTATTACAGGACCTAACACTGGTGGAAAAACAATTACCATCAA
AACATTAGGTTTGCTGCAATTAATGGCGCAATCAGGTTTATTTATCACAACAAAACGGCCATCCACAGTTGGCATTTTTA
ATGAGGTCTTTGCTGATATTGGTGATGAACAATCTATTGAGCAAAGTTTATCCACCTTTAGTTCACATATGGCCAATATT
GTTTCAATGCTTGATAATATTGATGATCAAACACTGGTTATTTTTGATGAATTGGGTGCAGGTACTGACCCCGCCGAAGG
GGCGGCTTTAGCGATTGCTATTTTGGATAAAGTTGCTAGTTTGGGAGCGTATGTTATTGCCACCACCCACTATCCAGAAT
TGAAATTATATGGTTATAATCGTCCAGAAACAATCAATGCTTCGATGGTATTTGATGTTGAAACATTGCGACCAACTTAT
CAATTTATGATGGGGGTGCCTGGTCAGTCCAATGCCTTAGCTATCGCTAAACGACTTGGGTTGGGGGAGGATGTGATTGG
TGCAGCCACAGCATTAACAAATGAATCAGATCAAGATTTAAATAACATGATTGCCGATCTGGTAACAAAGCGGGATCAAG
TTAATAAAGAACGAGAGATTCTTGAGTTACAATTGAAGACGACTGATGAGCAAGCCACGGCTTTTGAAGAAAAGCAGCGC
CAACTAGAAAAAGATCGCGCACAGATTGTCTTAGATGCTAAAAATGAAGCCAATCATATTGTAGCGTCAACAAAAAAACA
AGCTGAGCAATTGATTTCTGAGATACGTAAGGAACGTCTAAACGCAGGTCAACAGACAGGTCAGTTTAGTGAGCAAGACC
TACAAGCTAAAAAAGGTCAATTAGAAAAATTACGTCAGAATAATAGTTTAGAAAAAAATAAAGTCTTACAACGTGCTAAG
CGTGCCAAAGCGCTTGCTGCTGGTGATGAAATTTTGGTTAAATCTTATAGTCAGCAAGGTACTTTAGTTAAAAAACATAG
TAATGGTCAATGGGAAGTCGAGATGGGTATTTTGAAAATGCTTGTCGATGAAGACGATGTGGTTAAAACTGAAGCAACTG
CCAATGCCCAAAAATCTAAAGCAAAACAGAAACAAAGAAAAGTTGTGAAAACAAAAACAGCTGGAAATACAGTACGACAG
ACAGCTAGTGCTAAGTTAGATCTTCGTGGTGTACGATATGAAGCTGCGTTATCAGAATTAGATCGGTACTTGGATACTGC
GGTGTTAGCAAACCTTGGTGCGGTCGAAATTATTCACGGTAAAGGTACAGGTGCTTTACGTAAAGGTGTGACAGAATTTT
TACGGTCGGATCGTCGTGTGAAGAGCTTTCATTTTGCCAGTGCCAATGCCGGTGGGGATGGTGCGACAATAGCAGAATTA
GCTTGA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(647-687)

MutS domain V (MutS_V)

(332-514)

Smr domain (Smr)

(726-800)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

42.447

100

0.424