Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   Q5R05_RS05985 Genome accession   NZ_CP130703
Coordinates   1151928..1154321 (-) Length   797 a.a.
NCBI ID   WP_135197525.1    Uniprot ID   -
Organism   Leuconostoc carnosum strain AMS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1146928..1159321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5R05_RS05960 (Q5R05_05960) mvk 1146947..1147879 (+) 933 WP_135197521.1 mevalonate kinase -
  Q5R05_RS05965 (Q5R05_05965) - 1147932..1148921 (-) 990 WP_135197522.1 class A sortase -
  Q5R05_RS05970 (Q5R05_05970) - 1149028..1150020 (-) 993 WP_014974484.1 aldo/keto reductase -
  Q5R05_RS05975 (Q5R05_05975) - 1150023..1150916 (-) 894 WP_135197523.1 GDSL-type esterase/lipase family protein -
  Q5R05_RS05980 (Q5R05_05980) - 1150913..1151887 (-) 975 WP_135197524.1 ribose-phosphate pyrophosphokinase -
  Q5R05_RS05985 (Q5R05_05985) recD/recD2/recDB 1151928..1154321 (-) 2394 WP_135197525.1 ATP-dependent RecD-like DNA helicase Machinery gene
  Q5R05_RS05990 (Q5R05_05990) - 1154354..1155007 (-) 654 WP_014974488.1 histidine phosphatase family protein -
  Q5R05_RS05995 (Q5R05_05995) - 1155000..1155347 (-) 348 WP_135197526.1 cysteine desulfurase -
  Q5R05_RS06000 (Q5R05_06000) - 1155474..1156589 (-) 1116 WP_135197527.1 BMP family protein -
  Q5R05_RS06005 (Q5R05_06005) - 1156732..1158180 (-) 1449 WP_135197528.1 RsmF rRNA methyltransferase first C-terminal domain-containing protein -
  Q5R05_RS06010 (Q5R05_06010) rbsK 1158180..1159091 (-) 912 WP_135197529.1 ribokinase -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 88130.35 Da        Isoelectric Point: 4.9863

>NTDB_id=786632 Q5R05_RS05985 WP_135197525.1 1151928..1154321(-) (recD/recD2/recDB) [Leuconostoc carnosum strain AMS1]
MAYQEQQLEKITGTLQNVIFASSDSYFKILSIQIDDSTLEDWDEPEIIATGTFADVQEGSVYVFYGNVVRHPKYGKQLKV
ERYENELPPDENGLIKYFASGQFSGIGQKTAEKIVDHLGLNAVNLILDDTSILDGIVKEAQAKKLARTLQLNLGLERLFQ
VGNQFGIGADIAGRLFDQYGNEAQDILTQDPFRLVFEFDGISFKTADQIGHKIGINRDDKRRLQAAVYATIMNVSFQHGH
TYLTRQQLQQTSIHMLRDNSMSNEVELAIDTLLDNETLVADDDRLYTASLYAAEKSVAHDLKRLLQAKNPLDLTENDICD
AFVTPGNMTLDDMQRQAIQLGLSAQVFVLTGGPGTGKTTIVRSIVATWHQLLKDRVKFADDAKAFLKTYAVKMASPTGRA
AKRMTEVTGYEATTIHRLLGIADLDEPEFNIDNPLAGGLMIIDEASMLDIELTAKLLAAVPNGMKLIIVGDSDQLPSVGP
GNVLADLVNSGVIAHAELEIIYRQGRGSSITALAQHIKQGELPSDFLNNQLDRSAFMVAPEQADAAIKQVIQAAVKKGYT
QDDLQILTPMYKTPVGVNALNTMAQALFNPSRPTQKSLQFGTTIFRQGDKVLQLENDSERDVFNGDMGKIVAVEYKNDKG
NSDHEDRLVVDFDGKELPYPKKNLNQLTLAYATTVHKAQGNEFKLVIMALTTHFGLMLNRNLLYTGITRAKEALILVGEY
AAFSRAAQTAVPARLTFLKERLQIDGPRQEIDTVPKKNNNKAIIDHQLTTEMVMTGAIDPLIGLDGLTPYDFMPNIK

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=786632 Q5R05_RS05985 WP_135197525.1 1151928..1154321(-) (recD/recD2/recDB) [Leuconostoc carnosum strain AMS1]
ATGGCATATCAGGAACAACAATTAGAAAAAATTACTGGGACGTTGCAAAACGTCATTTTTGCGTCCAGTGATTCGTATTT
TAAAATATTATCTATTCAAATTGATGATTCAACATTAGAAGATTGGGACGAACCAGAAATTATTGCAACAGGTACTTTTG
CCGACGTACAAGAAGGTAGTGTTTATGTTTTTTATGGTAATGTTGTGCGTCACCCTAAATATGGGAAACAGCTTAAAGTA
GAACGTTATGAAAATGAATTACCACCAGATGAAAATGGTTTGATTAAGTATTTTGCTAGCGGACAATTTTCTGGTATTGG
TCAAAAAACTGCAGAAAAAATTGTCGATCATTTAGGATTAAACGCAGTCAATCTAATCTTGGATGACACTAGTATTTTGG
ATGGTATTGTTAAAGAAGCACAAGCTAAGAAGCTAGCGCGGACATTACAGTTAAATCTAGGATTAGAACGTTTGTTTCAG
GTTGGGAATCAGTTTGGAATTGGTGCTGATATTGCAGGACGGTTGTTTGATCAATATGGGAATGAGGCACAAGATATTCT
AACGCAAGATCCTTTTCGTTTGGTTTTTGAGTTTGATGGTATTTCTTTTAAAACTGCTGATCAAATTGGCCATAAAATTG
GAATTAATCGTGATGATAAACGACGCTTACAAGCAGCAGTGTATGCAACAATTATGAACGTTAGTTTTCAACATGGTCAT
ACTTATTTAACGCGCCAACAGTTGCAACAAACAAGTATCCACATGCTTCGTGATAATAGTATGTCAAATGAAGTTGAATT
AGCAATTGATACATTGCTTGACAACGAGACACTTGTAGCTGATGACGATCGCTTATATACAGCAAGTTTGTATGCGGCGG
AAAAATCGGTGGCTCATGATTTAAAACGTTTATTACAAGCTAAGAATCCACTTGATTTAACTGAAAATGATATTTGTGAT
GCGTTTGTTACACCAGGGAATATGACTTTGGATGACATGCAACGACAAGCAATTCAATTAGGGTTAAGTGCGCAGGTGTT
TGTATTGACTGGTGGTCCGGGTACTGGTAAAACTACCATTGTGCGTTCTATTGTTGCAACATGGCACCAATTATTGAAGG
ATCGTGTTAAATTTGCAGACGATGCTAAGGCGTTCTTGAAAACCTATGCTGTTAAAATGGCTTCTCCCACAGGACGTGCA
GCTAAGCGAATGACAGAGGTGACCGGCTATGAAGCGACAACAATTCATCGTTTACTAGGCATCGCTGATTTAGATGAGCC
TGAATTTAATATTGATAATCCACTGGCTGGGGGCTTGATGATTATTGATGAAGCATCAATGTTAGATATTGAGTTAACTG
CGAAACTGTTAGCAGCAGTGCCTAATGGTATGAAGTTAATCATCGTTGGTGATTCGGACCAGTTACCATCAGTGGGACCA
GGCAACGTTTTAGCTGACTTAGTGAATAGTGGTGTCATAGCGCATGCTGAATTAGAAATCATCTATCGTCAAGGTCGAGG
TAGTAGTATTACCGCGCTTGCACAACATATCAAGCAAGGCGAATTGCCGTCAGATTTCTTAAATAATCAGTTAGATCGCT
CAGCATTTATGGTAGCCCCAGAACAAGCGGATGCTGCCATAAAGCAAGTTATACAGGCAGCTGTTAAAAAAGGTTATACA
CAAGATGACCTGCAAATTCTAACGCCAATGTATAAAACACCAGTTGGAGTGAATGCCTTAAATACTATGGCGCAAGCACT
TTTTAATCCAAGTCGTCCAACACAAAAATCTTTGCAGTTTGGCACAACTATTTTTCGCCAAGGGGATAAAGTATTGCAAC
TTGAAAATGATAGTGAGCGTGATGTTTTTAATGGTGACATGGGTAAAATTGTTGCTGTGGAATATAAAAATGATAAGGGT
AATAGTGATCATGAAGATCGTTTAGTTGTTGATTTTGATGGGAAAGAATTACCTTATCCAAAGAAAAATCTTAATCAATT
AACTTTAGCTTATGCGACAACTGTTCACAAAGCGCAAGGCAATGAATTTAAGTTGGTGATTATGGCATTAACCACACATT
TTGGATTAATGCTGAATCGTAATTTACTTTACACTGGGATTACTCGTGCCAAAGAAGCGCTCATCTTAGTAGGAGAATAT
GCAGCCTTTAGCCGAGCGGCACAAACTGCTGTCCCAGCACGCCTAACATTTTTAAAAGAACGTTTGCAGATTGATGGGCC
GCGTCAAGAAATAGACACAGTACCTAAAAAAAATAACAATAAAGCGATTATTGATCATCAGTTAACGACAGAGATGGTGA
TGACTGGCGCTATTGACCCATTAATTGGGCTAGATGGGCTGACACCTTATGATTTCATGCCAAATATCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-242)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(580-652)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(670-717)

AAA domain (AAA_30)

(330-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

38.5

100

0.386