Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   Q4V64_RS17995 Genome accession   NZ_CP130630
Coordinates   4080811..4083054 (-) Length   747 a.a.
NCBI ID   WP_124442113.1    Uniprot ID   -
Organism   Streptomyces sp. NL15-2K     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4075811..4088054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4V64_RS17980 (Q4V64_17975) - 4076139..4076378 (+) 240 WP_124442116.1 heavy-metal-associated domain-containing protein -
  Q4V64_RS17985 (Q4V64_17980) - 4076451..4078739 (+) 2289 WP_124442115.1 heavy metal translocating P-type ATPase -
  Q4V64_RS17990 (Q4V64_17985) - 4079279..4080568 (-) 1290 WP_124442114.1 citrate synthase -
  Q4V64_RS17995 (Q4V64_17990) recD/recD2/recDB 4080811..4083054 (-) 2244 WP_124442113.1 ATP-dependent RecD-like DNA helicase Machinery gene
  Q4V64_RS18000 (Q4V64_17995) - 4083645..4084613 (-) 969 WP_124442112.1 helix-turn-helix domain-containing protein -
  Q4V64_RS18005 (Q4V64_18000) - 4085357..4085830 (+) 474 WP_124442111.1 DUF4333 domain-containing protein -
  Q4V64_RS18010 (Q4V64_18005) - 4086319..4086777 (-) 459 WP_124442110.1 MarR family transcriptional regulator -
  Q4V64_RS18015 (Q4V64_18010) - 4086907..4088043 (+) 1137 WP_124442109.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 80798.44 Da        Isoelectric Point: 6.4554

>NTDB_id=786260 Q4V64_RS17995 WP_124442113.1 4080811..4083054(-) (recD/recD2/recDB) [Streptomyces sp. NL15-2K]
MAQPTGSEERRLAVLEGVLERITYANEENGYTVARVDTGRGGGDLLTVVGALLGAQVGESLRMEGRWGSHPQYGKQFTVE
NYTTVLPATVQGIRRYLGSGLVKGIGPVFADRITQHFGLDTLQVIEEEPKRLIEVPGLGPKRTKKIADAWEEQKAIKEVM
LFLQTVEVSTSIAVRIYKKYGDASISVVKNQPYRLAADVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQATDQGN
CYLPEEQLIADAVKLLQVDTGLVIECLAELAAPPEEGEDPGVVREKVPGPDGDPVTAVYLVPFHRAELSLSAQLMRLLRT
DQDRMPGFKDVAWDKALGWLKGRTGVDLAPEQEAAVKLALTQKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTG
RAAKRLSELTGAEASTVHRLLELRPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLPSV
GAGEVLRDLLADGGPIPAVRLTRVFRQAQQSGVVTNAHRINSGQHPVTDGMKDFFLFVEDDTEEVGRLTVDVAARRIPAK
FGLDPRRDVQVLAPMHRGPAGAGNLNGLLQQAITPGRPDLSEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVGVVTS
LDPVDQRLTVLTDEDEEVPYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGS
RKAIGQAVRTVSAGRRCTALDFRLAGS

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=786260 Q4V64_RS17995 WP_124442113.1 4080811..4083054(-) (recD/recD2/recDB) [Streptomyces sp. NL15-2K]
ATGGCCCAACCAACGGGGAGCGAAGAGCGTCGACTGGCCGTACTCGAAGGCGTCCTGGAGCGGATCACGTACGCCAACGA
GGAGAACGGCTACACGGTGGCGCGCGTGGACACCGGCCGAGGCGGCGGCGACCTCCTCACGGTCGTCGGCGCGCTGCTCG
GCGCCCAGGTCGGCGAGTCCCTGCGGATGGAGGGCCGTTGGGGCTCCCATCCGCAGTACGGCAAGCAGTTCACGGTCGAG
AACTACACCACCGTCCTCCCTGCCACCGTCCAGGGCATCCGCCGCTACCTCGGCTCCGGCCTGGTCAAGGGCATCGGCCC
GGTCTTCGCCGACCGCATCACCCAGCACTTCGGCCTGGACACCCTGCAGGTCATCGAGGAGGAGCCGAAGCGGCTGATCG
AGGTCCCCGGCCTCGGCCCCAAGCGCACCAAGAAGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAGGAGGTCATG
CTCTTCCTCCAGACCGTCGAGGTGTCCACGTCGATCGCGGTCCGCATTTACAAGAAGTACGGCGACGCCTCCATCTCGGT
CGTCAAGAACCAGCCCTACCGGCTGGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGTCCG
TCGGCATCCCGCACGACAGCCCGGAGCGCGTCAAGGCGGGCCTGCAGTACGCGCTGTCGCAGGCCACCGACCAGGGCAAC
TGCTACCTCCCCGAGGAGCAGCTGATCGCGGACGCGGTGAAGCTGCTCCAGGTCGACACGGGCCTGGTCATCGAGTGCCT
CGCCGAGCTCGCGGCGCCCCCGGAGGAGGGAGAGGACCCCGGTGTCGTACGGGAGAAGGTCCCCGGACCGGACGGTGACC
CCGTCACGGCCGTCTACCTCGTCCCCTTCCACCGCGCCGAACTCTCCCTCTCCGCCCAGCTGATGCGCCTGCTGCGCACC
GACCAGGACCGGATGCCCGGCTTCAAGGACGTGGCCTGGGACAAGGCGCTGGGCTGGCTGAAGGGTCGCACGGGCGTCGA
CCTCGCCCCCGAGCAGGAGGCCGCCGTCAAACTGGCGCTCACCCAGAAGGTCGCGGTCCTCACCGGCGGTCCCGGCTGCG
GCAAGTCCTTCACCGTCCGTTCGATCGTGGAGCTGGCCCGCGCCAAGAAGGCCAAGGTCGTGCTCGCCGCCCCCACCGGC
CGCGCCGCCAAGCGCCTGTCCGAGCTCACCGGCGCCGAGGCCTCCACCGTCCACCGCCTGCTGGAGCTGAGGCCCGGCGG
CGACGCGGCCTACGACAAGGACCGCCCGCTGGACGCCGACCTGGTGGTGGTCGACGAGGCCTCCATGCTCGACCTGCTGC
TCGCCAACAAGCTCGTGAAGGCCGTACCCCCGGGCGCCCATCTCCTCTTCGTCGGTGACGTGGACCAGCTGCCCAGCGTC
GGCGCCGGCGAGGTCCTGCGCGATCTGCTCGCCGACGGCGGCCCCATCCCGGCCGTGCGCCTCACGCGCGTGTTCCGCCA
GGCCCAGCAGTCCGGAGTCGTGACCAACGCGCACCGGATCAACTCCGGGCAGCACCCGGTCACCGACGGCATGAAGGACT
TCTTCCTCTTCGTCGAGGACGACACGGAGGAGGTCGGCCGGCTCACGGTGGATGTGGCGGCCCGGCGGATTCCGGCCAAG
TTCGGTCTCGACCCGCGCCGGGACGTGCAGGTGCTCGCCCCCATGCACCGGGGGCCGGCCGGCGCGGGCAATCTCAACGG
CCTGCTCCAGCAGGCCATCACCCCGGGCCGCCCGGACCTGTCGGAGAAGCGGTTCGGCGGCCGGGTCTTCCGCGTCGGCG
ACAAGGTCACCCAGATTCGCAACAATTACGAGAAAGGGGAGAACGGTGTCTTCAACGGCACCGTGGGCGTGGTCACCTCG
CTCGACCCGGTCGACCAGCGCCTGACGGTGCTGACGGACGAGGACGAGGAGGTGCCGTACGAATTCGACGAGCTGGACGA
ACTGGCCCACGCGTACGCGGTGACGATCCACCGTTCCCAGGGAAGTGAGTATCCGGCGGTGGTGATCCCGGTCACCACCA
GTGCCTGGATGATGCTTCAGCGCAACCTGCTGTATACGGCGGTCACCCGCGCCAAGAAGCTGGTCGTGCTCGTCGGTTCA
CGCAAGGCGATCGGCCAGGCGGTGCGCACGGTGTCGGCGGGACGTCGCTGCACGGCCCTGGACTTCCGGCTCGCGGGCTC
CTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(670-718)

Helix-hairpin-helix domain (HHH_5)

(102-151)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-650)

AAA domain (AAA_30)

(348-526)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.968

100

0.365