Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QY054_RS12715 Genome accession   NZ_CP130602
Coordinates   2530881..2531993 (-) Length   370 a.a.
NCBI ID   WP_199290551.1    Uniprot ID   -
Organism   Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2525881..2536993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY054_RS12695 (QY054_12695) - 2526171..2526806 (+) 636 WP_011378467.1 peroxiredoxin -
  QY054_RS12700 (QY054_12700) - 2526978..2529293 (-) 2316 WP_011378468.1 secretin N-terminal domain-containing protein -
  QY054_RS12705 (QY054_12705) - 2529371..2530165 (-) 795 WP_011378469.1 hypothetical protein -
  QY054_RS12710 (QY054_12710) - 2530162..2530878 (-) 717 WP_011378470.1 PilN domain-containing protein -
  QY054_RS12715 (QY054_12715) pilM 2530881..2531993 (-) 1113 WP_199290551.1 type IV pilus biogenesis protein PilM Machinery gene
  QY054_RS12720 (QY054_12720) - 2532102..2533376 (-) 1275 WP_011378471.1 adenine phosphoribosyltransferase -
  QY054_RS12725 (QY054_12725) - 2533451..2534170 (+) 720 WP_234701761.1 DUF3038 domain-containing protein -
  QY054_RS12730 (QY054_12730) - 2534177..2535127 (+) 951 WP_011243958.1 DUF4335 domain-containing protein -
  QY054_RS12735 (QY054_12735) glyQ 2535242..2536120 (+) 879 WP_011378472.1 glycine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40779.82 Da        Isoelectric Point: 4.4566

>NTDB_id=785995 QY054_RS12715 WP_199290551.1 2530881..2531993(-) (pilM) [Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434]
MTLCANKKALLVVGIFSKFLGGDQSRLGVEITPERINLAHIGRKGNRLQLQDFVSVELPDGLFQDGRVLDSFSLSDLLRT
AINDNRIRTKRVSTAVPGREVITRLLPMPAELDDAELRETLINQEAALFLPFPREEADIDYLKLDYFLDADEVEKLHVLL
VATRRQVTDVYLDLFAQAGLTPDIVEVGSFALIRTIREALRQYGLQEAVILLNVEYDLTEIVIIVGGVPRFSRTIAMGTQ
QWQRAAAQAGIDNTGRGIDFLQGRSFTLLEPPADLLSQALARSVTELCDEVRRSADFYLSQETDIEVAKLYVAGPGSALP
TLPEFLGQRLGLPVELVDPVEGLGLEVAENLYLPNRADVGVVLGLATRGV

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=785995 QY054_RS12715 WP_199290551.1 2530881..2531993(-) (pilM) [Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434]
TTGACTCTCTGTGCAAATAAAAAGGCGCTTCTCGTGGTCGGCATTTTTTCTAAGTTTCTTGGTGGCGATCAATCGCGCCT
TGGGGTGGAAATTACCCCAGAGCGGATCAATCTTGCCCACATTGGCCGCAAGGGGAATCGCCTGCAGCTTCAGGATTTTG
TTTCCGTGGAGCTACCGGATGGGTTGTTTCAAGACGGGCGCGTGCTAGATAGCTTCAGCCTGTCCGATCTGCTCCGCACC
GCCATCAACGACAACCGCATCAGAACCAAAAGAGTCTCCACTGCGGTGCCAGGACGAGAGGTGATCACCCGGCTGCTGCC
CATGCCCGCGGAGCTCGATGATGCCGAATTGCGCGAGACACTGATCAATCAAGAAGCTGCTCTGTTCCTGCCCTTCCCGC
GTGAAGAGGCCGACATCGACTATCTGAAACTGGACTATTTTCTGGACGCGGATGAGGTCGAAAAGTTGCACGTCCTGCTC
GTGGCGACTCGTCGGCAGGTGACCGATGTCTACCTTGATCTCTTTGCCCAAGCTGGCCTGACGCCTGACATTGTGGAAGT
TGGGAGCTTTGCGCTAATCCGAACGATTCGCGAAGCGCTGCGCCAGTACGGATTGCAAGAAGCGGTCATTCTCCTCAACG
TGGAATATGACCTCACAGAAATCGTGATTATCGTTGGGGGCGTGCCTCGGTTTAGCCGCACGATCGCCATGGGTACTCAG
CAGTGGCAGCGGGCTGCAGCCCAAGCTGGTATCGACAATACAGGACGGGGTATTGATTTCCTGCAGGGGCGATCGTTCAC
ATTGCTCGAACCCCCGGCTGATCTCCTCTCTCAAGCTCTGGCACGATCGGTCACCGAGCTCTGTGATGAAGTACGGCGAT
CGGCTGACTTCTACCTCAGCCAAGAGACCGATATTGAAGTAGCCAAGCTCTACGTTGCAGGTCCAGGCTCAGCCTTGCCA
ACACTACCCGAGTTTCTGGGGCAACGCCTAGGGCTCCCTGTAGAACTCGTCGATCCTGTCGAGGGGTTGGGGCTCGAGGT
GGCGGAGAACCTTTATTTGCCAAATCGCGCTGATGTGGGCGTGGTGTTGGGCTTAGCCACGCGAGGAGTATAG

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilM; (PilM_2)

(28-368)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

46.556

98.108

0.457