NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	QY054_RS10035	Genome accession	NZ_CP130602
Coordinates	2009234..2010022 (-)	Length	262 a.a.
NCBI ID	WP_011244469.1	Uniprot ID	Q31LV4
Organism	Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2004234..2015022

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QY054_RS10010 (QY054_10010)	-	2004307..2005050 (+)	744	WP_011244474.1	DUF1995 family protein	-
QY054_RS10015 (QY054_10015)	-	2005057..2005827 (+)	771	WP_011244473.1	metallophosphoesterase family protein	-
QY054_RS10020 (QY054_10020)	-	2006049..2006582 (+)	534	WP_011244472.1	DUF4330 domain-containing protein	-
QY054_RS10025 (QY054_10025)	fni	2006591..2007637 (+)	1047	WP_011244471.1	type 2 isopentenyl-diphosphate Delta-isomerase	-
QY054_RS10030 (QY054_10030)	dacB	2007595..2008992 (+)	1398	WP_234909965.1	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	-
QY054_RS10035 (QY054_10035)	pilD	2009234..2010022 (-)	789	WP_011244469.1	A24 family peptidase	Machinery gene
QY054_RS10040 (QY054_10040)	-	2010028..2010270 (-)	243	WP_011378244.1	hypothetical protein	-
QY054_RS10045 (QY054_10045)	msrA	2010389..2011129 (-)	741	WP_011378245.1	peptide-methionine (S)-S-oxide reductase MsrA	-
QY054_RS10050 (QY054_10050)	arsB	2011216..2012277 (-)	1062	WP_011378246.1	ACR3 family arsenite efflux transporter	-
QY054_RS10055 (QY054_10055)	-	2012365..2013366 (+)	1002	WP_011378247.1	ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase	-
QY054_RS10060 (QY054_10060)	arsJ	2013363..2014622 (+)	1260	WP_011244464.1	organoarsenical effux MFS transporter ArsJ	-

Sequence

Protein

Download Length: 262 a.a. Molecular weight: 28556.30 Da Isoelectric Point: 9.9455

                                >NTDB_id=785984 QY054_RS10035 WP_011244469.1 2009234..2010022(-) (pilD) [Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434]

MFEAVALLFVAVLGAAIGSFLNVVIYRLPLGLSLLHPPSRCPYCRRSLRPQDNLPVVGWLKLRGRCHFCQHRIPARYPIV

EALTAALFVLLAVQFGWSAATLGGWIFFSWLLALSVIDLDTMTLPNVLTASGLAVGVAFQLAIAPATWPVTLFWSLFVAI

AALWLSDLFRWLGEFALRQPVLGGGDSKLLALLGVWLGGPKLLLALFLACLSGAIAGGIGRWRGTLKPMQAMPFGPFLAL

GGAIAWIWGAEWIDLYMRVLLF

Nucleotide

Download Length: 789 bp

                                >NTDB_id=785984 QY054_RS10035 WP_011244469.1 2009234..2010022(-) (pilD) [Synechococcus elongatus PCC 7942 = FACHB-805 strain UTEX 2434]

ATGTTTGAAGCCGTTGCGCTGCTGTTTGTCGCAGTTTTGGGAGCCGCGATCGGGAGCTTTTTAAATGTGGTGATCTACCG

ATTGCCCCTCGGTCTGTCACTGCTGCATCCCCCCTCCCGCTGTCCCTACTGCCGGCGATCGCTGCGGCCGCAAGATAATC

TGCCGGTTGTTGGCTGGCTAAAGCTGCGGGGGCGTTGCCATTTCTGCCAGCATCGGATTCCCGCTCGCTACCCAATTGTT

GAAGCCCTAACTGCTGCTCTGTTCGTCCTGCTGGCGGTGCAGTTTGGCTGGTCTGCGGCCACGCTCGGCGGCTGGATTTT

TTTCTCGTGGTTGCTTGCGCTCAGTGTCATAGACCTCGATACGATGACCCTACCCAATGTCTTGACGGCGTCGGGGCTGG

CGGTGGGTGTGGCTTTTCAGTTGGCGATCGCACCCGCAACCTGGCCCGTGACCCTGTTCTGGTCCTTGTTTGTGGCGATC

GCGGCGCTATGGCTGAGTGATCTATTTCGCTGGCTGGGAGAATTCGCTCTGCGGCAGCCGGTGCTCGGGGGCGGTGACAG

CAAGTTGTTGGCGCTGTTGGGTGTTTGGCTGGGCGGGCCCAAACTCCTTTTGGCACTGTTCCTTGCTTGCCTGAGTGGTG

CAATCGCGGGGGGGATTGGGCGTTGGCGCGGCACCCTCAAACCCATGCAAGCAATGCCTTTTGGCCCATTCCTGGCCTTG

GGTGGGGCGATCGCTTGGATCTGGGGAGCCGAGTGGATTGATCTCTATATGCGAGTTTTGCTCTTTTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(12-95)

Type IV leader peptidase family (Peptidase_A24)

(106-217)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q31LV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio campbellii strain DS40M4	37.276	100	0.397
pilD	Vibrio cholerae strain A1552	36.299	100	0.389

Detailed information NTG0785984