Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GsuE55_RS01445 Genome accession   NZ_AP022557
Coordinates   315415..317781 (+) Length   788 a.a.
NCBI ID   WP_061912359.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain E55-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 310415..322781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GsuE55_RS01430 (GsuE55_02910) - 311471..311755 (+) 285 WP_033018077.1 post-transcriptional regulator -
  GsuE55_RS01435 (GsuE55_02920) secDF 311922..314174 (+) 2253 WP_061912342.1 protein translocase subunit SecDF -
  GsuE55_RS01440 (GsuE55_02930) - 314455..315357 (+) 903 WP_061912341.1 cation diffusion facilitator family transporter -
  GsuE55_RS01445 (GsuE55_02940) recJ 315415..317781 (+) 2367 WP_061912359.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GsuE55_RS01450 (GsuE55_02950) - 317772..318284 (+) 513 WP_061912340.1 adenine phosphoribosyltransferase -
  GsuE55_RS01455 (GsuE55_02960) - 318555..320753 (+) 2199 WP_061912339.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  GsuE55_RS01460 (GsuE55_02970) dtd 320778..321236 (+) 459 WP_061912338.1 D-aminoacyl-tRNA deacylase -
  GsuE55_RS01465 (GsuE55_02980) - 321319..321492 (+) 174 WP_172418467.1 hypothetical protein -
  GsuE55_RS01470 (GsuE55_02990) ahpC 321660..322223 (+) 564 WP_033018069.1 alkyl hydroperoxide reductase subunit C -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 87529.31 Da        Isoelectric Point: 6.2425

>NTDB_id=78598 GsuE55_RS01445 WP_061912359.1 315415..317781(+) (recJ) [Geobacillus subterraneus strain E55-1]
MLQAKTRWEVERPDEQAVRRLAEEAGIEPLLARLLVRRGVRTAAEAEAFLRPVGQPFHDPFLLHGMERAVRRLERAIHHG
ERVLVYGDYDADGVCSTSVMVSALQEAGAAVEFYIPNRFTEGYGPNLAAFRAAKERGVSVIVTVDNGIAALKEVAAAREW
GLDVIVTDHHEPGPSLPEAYAIIHPKHPGSTYPFHSLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLL
AAQGLAVLRETTRIGLRALFQQCRIQPSQIDEQTVGFAIAPRLNAVGRLGGADPAVALLMTDDEDEAMQLAAEMDERNRE
RQQLVAQIADEAADMVRRQYPPEQHRVLVVAGEGWNPGVVGIVASKLVEQFYRPAVVLSIDRDKGIAKGSARSIHGFDLF
ASLSKCRDMLPHFGGHPMAAGMTLALDDVERLRQRLNAIAAETLVEDDFIPPTFIDAVCSVEELTLSAARSFERLAPFGV
GNPRPLLLIEEAAVETMRRVGANGAHMKAVFSQQQAAIDVIGFGLGPLCEEIAPGTCVSAVGELLVNEWNGMAKPQLSLC
DVSVNRWQLFDARGCRDVHSLLERLPEEKRLLVAFRRQTETRPDLAPFCRELHFVMTEKEAEALPIDGRYVVLLDLPPRL
DLLGALLGNGQPARIYAVFAQPEGQFFRTFPTRDHFKWFYAFLHKHRSFPLAERGGELARARGWTTETVHFMAEVFLELG
FVREQNGVITLVRQPVKRDLTESRAYRRHRDELEAEHQLLYSTYEQLKRCLTEMIRSQTNEEASASWI

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=78598 GsuE55_RS01445 WP_061912359.1 315415..317781(+) (recJ) [Geobacillus subterraneus strain E55-1]
ATGTTACAAGCGAAAACGCGTTGGGAGGTGGAGCGTCCCGACGAGCAGGCGGTGAGGCGCTTGGCGGAGGAAGCCGGCAT
CGAACCGCTGCTGGCGCGGCTTCTCGTTCGTCGCGGCGTGCGGACAGCAGCGGAAGCGGAGGCGTTTCTCCGTCCCGTTG
GGCAGCCGTTTCACGATCCGTTCTTGCTCCATGGGATGGAGCGTGCCGTTCGCCGCCTAGAAAGAGCAATTCACCATGGT
GAACGCGTGCTCGTCTATGGCGACTATGATGCGGACGGTGTTTGCAGCACATCGGTGATGGTGAGCGCTCTTCAAGAGGC
AGGAGCAGCGGTGGAATTTTACATTCCCAACCGCTTTACCGAAGGATACGGCCCGAACTTGGCGGCGTTTCGCGCGGCAA
AGGAGCGCGGCGTGTCCGTCATTGTGACAGTTGACAACGGAATTGCGGCGCTGAAGGAAGTGGCCGCCGCCCGCGAGTGG
GGGCTTGATGTGATCGTGACCGATCACCACGAGCCAGGGCCCTCGCTCCCGGAAGCGTATGCGATCATTCACCCGAAGCA
TCCCGGAAGTACATATCCGTTCCATAGTTTGGCCGGCGTCGGCGTCGCGTTCAAGGTAGCCCATGCGCTGCTCGGACGGG
TGCCGCGCCATTTGCTTGATTTGGTGGCCATCGGCACGATTGCTGATTTAGTGCCGCTTGTCGGGGAGAACCGGCTCTTG
GCTGCGCAAGGACTGGCGGTATTGCGCGAGACAACCCGCATCGGTTTGCGCGCGCTGTTTCAGCAATGCCGCATCCAACC
ATCCCAGATCGATGAACAGACGGTCGGCTTCGCCATCGCGCCGCGTTTGAATGCGGTTGGGCGTCTGGGCGGCGCCGATC
CGGCGGTGGCGCTGTTAATGACCGATGATGAAGACGAGGCCATGCAGCTGGCGGCGGAAATGGACGAGCGGAATCGCGAG
CGCCAGCAGCTCGTCGCGCAAATCGCCGATGAGGCGGCAGACATGGTGCGCCGCCAATATCCGCCGGAGCAGCATCGCGT
TTTGGTCGTGGCTGGCGAAGGCTGGAATCCCGGAGTGGTCGGCATCGTCGCATCCAAGCTCGTCGAACAGTTTTACCGGC
CGGCGGTGGTGCTCTCCATTGACCGCGACAAAGGCATCGCCAAAGGCTCGGCGCGCAGCATCCACGGATTTGACTTGTTT
GCCAGTCTCTCCAAATGCCGCGATATGTTGCCGCATTTTGGCGGTCACCCGATGGCGGCGGGGATGACCTTGGCGTTGGA
CGACGTCGAGCGGTTGCGGCAGCGGCTGAACGCGATCGCGGCGGAGACGTTGGTCGAGGACGATTTTATCCCGCCGACGT
TCATCGATGCGGTTTGCTCGGTCGAAGAGCTGACGCTGTCGGCCGCTCGCAGTTTCGAGCGGCTCGCCCCATTCGGTGTC
GGCAATCCGCGACCGCTTTTGCTCATTGAAGAAGCCGCGGTGGAAACGATGCGGCGCGTCGGGGCGAACGGCGCCCATAT
GAAGGCAGTCTTTTCGCAACAGCAGGCGGCGATTGATGTCATCGGCTTCGGCCTCGGTCCATTGTGCGAGGAGATCGCTC
CGGGGACGTGCGTCTCGGCCGTGGGAGAGCTGTTGGTGAACGAGTGGAACGGGATGGCGAAGCCGCAGTTGTCGCTATGC
GACGTGTCGGTCAACCGCTGGCAGCTGTTTGATGCCCGCGGCTGCCGGGACGTTCATTCGCTTCTTGAGCGGCTGCCAGA
GGAGAAGCGGCTGCTGGTGGCCTTTCGGCGCCAGACGGAAACCCGCCCTGACTTGGCGCCGTTTTGCCGGGAGCTTCATT
TCGTCATGACGGAGAAAGAGGCGGAGGCTTTGCCGATTGACGGCCGCTATGTCGTGCTGCTTGATTTGCCACCGCGGCTT
GATTTGTTGGGGGCGCTTTTAGGCAACGGGCAGCCGGCGCGCATTTATGCCGTGTTCGCGCAGCCGGAAGGGCAATTTTT
CCGCACGTTTCCGACGCGCGACCATTTCAAGTGGTTTTATGCCTTTTTGCATAAGCATCGTTCGTTCCCGCTCGCCGAAC
GCGGCGGCGAATTGGCGCGCGCCCGCGGCTGGACGACAGAAACGGTCCATTTTATGGCCGAAGTCTTTTTGGAGCTGGGG
TTTGTGCGCGAGCAAAACGGCGTTATCACGCTCGTTCGCCAGCCTGTAAAGCGCGATCTCACCGAATCCCGGGCGTACCG
TCGGCACCGGGACGAGCTGGAGGCGGAACATCAGTTATTATACTCCACTTACGAGCAGCTGAAACGCTGTTTGACGGAAA
TGATTCGTTCGCAAACGAATGAGGAGGCAAGCGCATCATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-560)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHHA1 domain (DHHA1)

(315-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.145

98.858

0.525

Multiple sequence alignment