Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSQ91_RS00030 Genome accession   NZ_CP117486
Coordinates   6804..7325 (+) Length   173 a.a.
NCBI ID   WP_002829316.1    Uniprot ID   A0AAN5YAY2
Organism   Pediococcus acidilactici strain SRCM102024     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1804..12325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSQ91_RS00020 (PSQ91_00020) gyrA 3775..6294 (+) 2520 WP_087609175.1 DNA gyrase subunit A -
  PSQ91_RS00025 (PSQ91_00025) rpsF 6480..6767 (+) 288 WP_002829317.1 30S ribosomal protein S6 -
  PSQ91_RS00030 (PSQ91_00030) ssb 6804..7325 (+) 522 WP_002829316.1 single-stranded DNA-binding protein Machinery gene
  PSQ91_RS00035 (PSQ91_00035) rpsR 7355..7591 (+) 237 WP_002829315.1 30S ribosomal protein S18 -
  PSQ91_RS00040 (PSQ91_00040) - 7804..9801 (+) 1998 WP_024862775.1 DHH family phosphoesterase -
  PSQ91_RS00045 (PSQ91_00045) rplI 9807..10259 (+) 453 WP_002830768.1 50S ribosomal protein L9 -
  PSQ91_RS00050 (PSQ91_00050) dnaB 10309..11706 (+) 1398 WP_065124033.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18874.39 Da        Isoelectric Point: 4.6207

>NTDB_id=785959 PSQ91_RS00030 WP_002829316.1 6804..7325(+) (ssb) [Pediococcus acidilactici strain SRCM102024]
MINRAVLVGRLTRDPELRYTSSGAAVVSFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVADNFSLLESRSASERRQENEGFNNGQSAPSQSSAGNPFDSGQANNNGAASQPNNSNPNDPFANG
GQSIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=785959 PSQ91_RS00030 WP_002829316.1 6804..7325(+) (ssb) [Pediococcus acidilactici strain SRCM102024]
ATGATTAATCGTGCCGTACTAGTTGGACGTTTAACAAGAGATCCTGAACTACGATATACAAGTAGTGGCGCTGCCGTAGT
TAGTTTTACCGTGGCGGTTAACCGTCAGTTTACTAACTCACAGGGTGAACGCGAAGCGGATTTCATCAACTGTGTAATGT
GGCGGAAAGCGGCGGAAAACTTCGCCAACTTCACGCGTAAGGGCTCTCTAGTAGGTATCGACGGTCGGATCCAAACCCGT
TCGTACGAAAACCAACAAGGACAACGAGTATACGTTACCGAAGTTGTTGCGGATAACTTCTCACTTCTTGAATCCCGTTC
GGCTTCCGAACGCCGTCAAGAAAATGAAGGCTTCAACAACGGTCAATCTGCCCCTTCACAATCATCTGCTGGAAATCCTT
TTGACAGTGGTCAAGCGAATAACAATGGTGCTGCATCGCAGCCTAACAATTCGAACCCGAACGATCCGTTTGCAAATGGC
GGACAGTCAATTGATATTTCTGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

69.318

100

0.705
  ssbA Bacillus subtilis subsp. subtilis str. 168

60

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

61.272

0.376