Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LLID5_RS01150 Genome accession   NZ_AP025701
Coordinates   230069..231946 (+) Length   625 a.a.
NCBI ID   WP_251919002.1    Uniprot ID   -
Organism   Lactococcus lactis strain ID-5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 225069..236946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLID5_RS01130 (LLID5_02140) - 225259..226536 (-) 1278 WP_251918999.1 NAD(P)/FAD-dependent oxidoreductase -
  LLID5_RS01135 (LLID5_02150) - 226677..227504 (+) 828 WP_031559148.1 NAD(P)H-hydrate dehydratase -
  LLID5_RS01140 (LLID5_02160) - 227653..228066 (+) 414 WP_003131176.1 DUF1398 domain-containing protein -
  LLID5_RS01145 (LLID5_02170) - 228237..230072 (+) 1836 WP_010905248.1 ABC transporter ATP-binding protein -
  LLID5_RS01150 (LLID5_02180) rcrQ 230069..231946 (+) 1878 WP_251919002.1 ABC transporter ATP-binding protein Regulator
  LLID5_RS01155 (LLID5_02190) - 232043..232696 (+) 654 WP_010905251.1 YcjF family protein -
  LLID5_RS01160 (LLID5_02200) - 232741..233760 (-) 1020 WP_251919005.1 Gfo/Idh/MocA family oxidoreductase -
  LLID5_RS01165 (LLID5_02210) - 233744..233911 (-) 168 WP_003131184.1 hypothetical protein -
  LLID5_RS01170 (LLID5_02220) - 234099..234575 (-) 477 WP_003131187.1 S-ribosylhomocysteine lyase -
  LLID5_RS01175 (LLID5_02230) - 234788..235252 (+) 465 WP_010905253.1 GyrI-like domain-containing protein -
  LLID5_RS01180 (LLID5_02240) - 235317..236162 (+) 846 WP_251919008.1 aldo/keto reductase -
  LLID5_RS01185 (LLID5_02250) - 236328..236840 (+) 513 WP_023189990.1 isochorismatase family cysteine hydrolase -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70299.21 Da        Isoelectric Point: 9.0332

>NTDB_id=78593 LLID5_RS01150 WP_251919002.1 230069..231946(+) (rcrQ) [Lactococcus lactis strain ID-5]
MMRGNYLNRGGKGADRFQKGRRAQNFFPTIIRLFKYMRRDLWGLLFSILIASLSVILSVQAPKILGNATTVIFDGVTKSL
KNHTAIQIDMTKVESILLYVMVIYLISFISGILQQSIMTRISQRTVYTLRREFKNKMKKLPVSYYDSHSNGDIMSRMIND
MDNISGTLNQTLIQLITSLLQFVGTIYFMLTISWQLALVAFITVPLAMITVRIVAPLSQKFFAEQQKNLGLLNDQIEEKY
AGHAVIKTFNHEASAEKEFAKRNDNFYKSAWKAQFVSTLIYPTMRFINNLDYLAMAVIGGLKVISGTVNLGDVQAMLQYT
NQFAQPITNISNMLNTIQATVASAERIFEVLDEKEMTDGIPVSEKVADESSKKAVSNLGATDKTDFINFDQVAFSYNENQ
SLMTDVNFSVEVGQMIAIVGPTGAGKTTMINLLERFYDVTSGKILLEGKDIREIDREQLRGRMAMVLQETWLFSGTIMDN
LQYGRLEATQEEVIQAAKMAHADEFITTLPQGYQTLLNEAASNISQGQRQLLTIARAFLANPEILILDEATSSVDTRTER
LIQSAMNRLLKGRTSFVVAHRLSTIRDANQILVMENGNIVEMGNHESLLKENGLYASLYNSQFAK

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=78593 LLID5_RS01150 WP_251919002.1 230069..231946(+) (rcrQ) [Lactococcus lactis strain ID-5]
ATGATGAGAGGAAATTATCTCAATCGAGGTGGCAAAGGGGCTGACCGTTTTCAAAAAGGTCGGCGAGCTCAAAATTTCTT
TCCAACGATTATTCGACTTTTCAAATATATGCGCAGAGATTTATGGGGACTTCTTTTTTCAATTTTAATTGCTTCGCTGT
CAGTCATTTTGTCGGTTCAGGCACCCAAAATTTTGGGAAATGCAACCACAGTGATATTTGATGGCGTAACAAAAAGTCTA
AAAAACCATACCGCAATTCAAATTGACATGACTAAGGTCGAATCTATTTTGCTTTATGTCATGGTCATTTATCTGATTTC
ATTTATCTCTGGGATTTTGCAACAAAGCATTATGACACGCATTTCGCAACGAACAGTTTATACTTTACGTCGTGAATTTA
AAAACAAAATGAAAAAATTGCCAGTTTCATATTATGATAGCCATAGTAATGGGGATATCATGAGTCGAATGATAAATGAT
ATGGATAATATTTCAGGGACTTTAAATCAAACTTTGATTCAGCTTATCACAAGTCTCTTGCAATTTGTTGGAACTATTTA
TTTCATGTTGACCATCTCTTGGCAGTTGGCACTCGTCGCCTTTATCACAGTTCCTTTGGCAATGATTACGGTAAGGATTG
TTGCACCTTTATCGCAAAAATTCTTTGCTGAACAACAAAAAAATCTGGGATTATTGAATGACCAAATTGAAGAAAAATAT
GCAGGACATGCGGTCATTAAAACATTCAATCATGAAGCCTCAGCTGAAAAAGAATTCGCAAAAAGAAATGATAATTTTTA
TAAATCAGCTTGGAAAGCTCAATTTGTATCGACTTTGATTTATCCAACCATGCGATTTATCAATAATTTAGATTACTTAG
CCATGGCCGTAATTGGTGGTCTTAAAGTTATTTCAGGGACGGTTAATCTCGGAGATGTTCAAGCCATGTTGCAATATACC
AATCAATTTGCACAGCCAATCACAAATATCTCGAATATGCTCAATACCATTCAGGCTACAGTTGCGTCAGCCGAACGAAT
TTTTGAAGTATTAGATGAAAAAGAAATGACTGACGGAATTCCTGTCAGTGAAAAAGTTGCTGACGAAAGTTCAAAAAAAG
CTGTCAGTAATTTAGGAGCGACTGACAAGACTGATTTCATCAATTTTGACCAAGTCGCATTTTCTTATAATGAAAATCAA
TCCTTAATGACAGATGTTAATTTTTCCGTTGAAGTTGGGCAAATGATTGCCATTGTGGGACCAACTGGAGCAGGTAAAAC
AACAATGATTAACTTGCTCGAACGATTTTACGATGTCACTTCGGGAAAAATTTTACTTGAAGGAAAAGACATTCGCGAAA
TTGACCGTGAACAATTACGTGGACGAATGGCAATGGTTTTACAAGAAACCTGGTTGTTCTCAGGGACAATTATGGATAAT
TTACAGTATGGTCGTCTTGAAGCAACACAAGAAGAAGTGATTCAAGCAGCTAAAATGGCACATGCTGATGAATTTATCAC
CACTTTACCTCAAGGTTATCAAACCCTTTTGAATGAAGCCGCAAGCAATATTTCTCAGGGGCAAAGGCAGTTATTAACCA
TCGCCCGTGCCTTTTTAGCAAATCCAGAAATATTGATTTTGGATGAAGCCACATCCAGTGTAGATACAAGAACGGAGCGC
CTGATTCAATCAGCGATGAATCGTCTATTAAAAGGACGGACAAGCTTTGTCGTTGCTCACCGTTTATCAACTATTCGTGA
TGCCAATCAGATTTTGGTTATGGAAAATGGAAATATTGTGGAAATGGGGAACCATGAAAGTCTCCTTAAAGAAAACGGAT
TATATGCCAGTCTTTATAATTCGCAATTTGCAAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(44-326)

ABC transporter (ABC_tran)

(404-552)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.809

94.88

0.387

Multiple sequence alignment