Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | LLID5_RS00350 | Genome accession | NZ_AP025701 |
| Coordinates | 71212..72471 (-) | Length | 419 a.a. |
| NCBI ID | WP_010905110.1 | Uniprot ID | Q9CJA3 |
| Organism | Lactococcus lactis strain ID-5 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 66212..77471
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLID5_RS00325 (LLID5_00560) | - | 67154..67744 (+) | 591 | WP_003132255.1 | flavin reductase family protein | - |
| LLID5_RS00330 (LLID5_00570) | rpmG | 67824..67973 (-) | 150 | WP_003132258.1 | 50S ribosomal protein L33 | - |
| LLID5_RS00335 (LLID5_00580) | rpmF | 68003..68176 (-) | 174 | WP_010905107.1 | 50S ribosomal protein L32 | - |
| LLID5_RS00340 (LLID5_00590) | - | 68540..70321 (+) | 1782 | WP_251918922.1 | heavy metal translocating P-type ATPase | - |
| LLID5_RS00345 (LLID5_00600) | spo0J | 70372..71157 (-) | 786 | WP_042229977.1 | ParB/RepB/Spo0J family partition protein | Regulator |
| LLID5_RS00350 (LLID5_00610) | rarA | 71212..72471 (-) | 1260 | WP_010905110.1 | replication-associated recombination protein A | Machinery gene |
| LLID5_RS00355 (LLID5_00620) | - | 72515..73003 (-) | 489 | WP_012896945.1 | GNAT family N-acetyltransferase | - |
| LLID5_RS00360 (LLID5_00630) | - | 73155..73622 (+) | 468 | WP_010905112.1 | DUF3013 family protein | - |
| LLID5_RS00365 (LLID5_00640) | - | 73652..75205 (+) | 1554 | WP_058205583.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| LLID5_RS00370 (LLID5_00650) | - | 75336..75620 (+) | 285 | WP_010905114.1 | hypothetical protein | - |
| LLID5_RS00375 (LLID5_00660) | - | 75658..76146 (+) | 489 | WP_010905115.1 | YdeI/OmpD-associated family protein | - |
| LLID5_RS00380 (LLID5_00670) | prmA | 76164..77117 (+) | 954 | WP_058202929.1 | 50S ribosomal protein L11 methyltransferase | - |
Sequence
Protein
Download Length: 419 a.a. Molecular weight: 46781.10 Da Isoelectric Point: 5.7588
>NTDB_id=78591 LLID5_RS00350 WP_010905110.1 71212..72471(-) (rarA) [Lactococcus lactis strain ID-5]
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVN
LSLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVN
LSLQDKERGFDFDVTIDDDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKDGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVSALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIDEQKKRS
Nucleotide
Download Length: 1260 bp
>NTDB_id=78591 LLID5_RS00350 WP_010905110.1 71212..72471(-) (rarA) [Lactococcus lactis strain ID-5]
ATGGCACAAAATCTTGCAAGACGAATGAGACCAAGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCGATTGCTGGAACAATGAATGTCGCATTTCGGACATTTAATGCAACGACAGACACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGCCAACTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCTAA
ACAAGATTTTCTTTTACCACTTTTAGAAAATGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAAGATTTAGAATTTGCTGTAAAC
CTAAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACCATTGACGATGATGCACTTTACTTTTTAATTCATTC
AACTAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACATCATGTCACTCTAG
ATGATATGGAAAATTCTTTACAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGCGGAGATTTGCA
AAGTCTAGCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCAGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAATGCGGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTACC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAGGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA
ATGGCACAAAATCTTGCAAGACGAATGAGACCAAGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCGATTGCTGGAACAATGAATGTCGCATTTCGGACATTTAATGCAACGACAGACACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGCCAACTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCTAA
ACAAGATTTTCTTTTACCACTTTTAGAAAATGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAAGATTTAGAATTTGCTGTAAAC
CTAAGTTTACAAGATAAAGAACGTGGATTTGATTTTGATGTGACCATTGACGATGATGCACTTTACTTTTTAATTCATTC
AACTAATGGGGATTTACGTTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACATCATGTCACTCTAG
ATGATATGGAAAATTCTTTACAAAGAAAAGCTGCAACTTTTGATAAAGATGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGCGGAGATTTGCA
AAGTCTAGCCCGGCGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTT
CAGCATTATCAGCAGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCCCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAATGCGGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTACC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAGGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTTC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGATGAACAAAAAAAGAGGAGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
59.479 |
100 |
0.599 |