Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q3V78_RS06460 Genome accession   NZ_CP130538
Coordinates   1289941..1290714 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain SA11-SX     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1284941..1295714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V78_RS06440 trmFO 1285285..1286592 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  Q3V78_RS06445 xerC 1287009..1287905 (+) 897 WP_001015611.1 tyrosine recombinase XerC -
  Q3V78_RS06450 hslV 1287902..1288447 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  Q3V78_RS06455 hslU 1288513..1289916 (+) 1404 WP_000379045.1 ATP-dependent protease ATPase subunit HslU -
  Q3V78_RS06460 codY 1289941..1290714 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q3V78_RS06465 - 1290765..1290857 (+) 93 WP_031788481.1 hypothetical protein -
  Q3V78_RS06470 rpsB 1291056..1291823 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  Q3V78_RS06475 - 1291857..1291970 (+) 114 WP_001789890.1 hypothetical protein -
  Q3V78_RS06480 tsf 1292005..1292886 (+) 882 WP_000201387.1 translation elongation factor Ts -
  Q3V78_RS06485 pyrH 1293023..1293745 (+) 723 WP_303262008.1 UMP kinase -
  Q3V78_RS06490 frr 1293764..1294318 (+) 555 WP_001280006.1 ribosome recycling factor -
  Q3V78_RS06495 - 1294691..1295461 (+) 771 WP_000473706.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=784834 Q3V78_RS06460 WP_000055337.1 1289941..1290714(+) (codY) [Staphylococcus aureus strain SA11-SX]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=784834 Q3V78_RS06460 WP_000055337.1 1289941..1290714(+) (codY) [Staphylococcus aureus strain SA11-SX]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCGATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428