Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q3V88_RS05930 Genome accession   NZ_CP130537
Coordinates   1218556..1219329 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain SA12-SX     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1213556..1224329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V88_RS05910 trmFO 1213900..1215207 (+) 1308 WP_000195259.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  Q3V88_RS05915 xerC 1215624..1216520 (+) 897 WP_001015598.1 tyrosine recombinase XerC -
  Q3V88_RS05920 hslV 1216517..1217062 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  Q3V88_RS05925 hslU 1217128..1218531 (+) 1404 WP_000379046.1 ATP-dependent protease ATPase subunit HslU -
  Q3V88_RS05930 codY 1218556..1219329 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q3V88_RS05935 - 1219380..1219472 (+) 93 WP_001790530.1 hypothetical protein -
  Q3V88_RS05940 rpsB 1219671..1220438 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  Q3V88_RS05945 - 1220472..1220585 (+) 114 WP_001789890.1 hypothetical protein -
  Q3V88_RS05950 tsf 1220620..1221501 (+) 882 WP_000201387.1 translation elongation factor Ts -
  Q3V88_RS05955 pyrH 1221638..1222360 (+) 723 WP_000057330.1 UMP kinase -
  Q3V88_RS05960 frr 1222379..1222933 (+) 555 WP_001280006.1 ribosome recycling factor -
  Q3V88_RS05965 - 1223306..1224076 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=784747 Q3V88_RS05930 WP_000055337.1 1218556..1219329(+) (codY) [Staphylococcus aureus strain SA12-SX]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=784747 Q3V88_RS05930 WP_000055337.1 1218556..1219329(+) (codY) [Staphylococcus aureus strain SA12-SX]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428