Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q3V67_RS06110 Genome accession   NZ_CP130533
Coordinates   1241618..1242391 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain SA15-SX     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1236618..1247391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V67_RS06090 trmFO 1236962..1238269 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  Q3V67_RS06095 xerC 1238686..1239582 (+) 897 WP_001015602.1 tyrosine recombinase XerC -
  Q3V67_RS06100 hslV 1239579..1240124 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  Q3V67_RS06105 hslU 1240190..1241593 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  Q3V67_RS06110 codY 1241618..1242391 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q3V67_RS06115 - 1242442..1242534 (+) 93 WP_031788481.1 hypothetical protein -
  Q3V67_RS06120 rpsB 1242733..1243500 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  Q3V67_RS06125 - 1243534..1243647 (+) 114 WP_001789890.1 hypothetical protein -
  Q3V67_RS06130 tsf 1243682..1244563 (+) 882 WP_000201387.1 translation elongation factor Ts -
  Q3V67_RS06135 pyrH 1244700..1245422 (+) 723 WP_050956316.1 UMP kinase -
  Q3V67_RS06140 frr 1245441..1245995 (+) 555 WP_001280006.1 ribosome recycling factor -
  Q3V67_RS06145 - 1246368..1247138 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=784477 Q3V67_RS06110 WP_000055337.1 1241618..1242391(+) (codY) [Staphylococcus aureus strain SA15-SX]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=784477 Q3V67_RS06110 WP_000055337.1 1241618..1242391(+) (codY) [Staphylococcus aureus strain SA15-SX]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428