Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q3V57_RS05885 Genome accession   NZ_CP130525
Coordinates   1234657..1235430 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain SA20-SX     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1229657..1240430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V57_RS05865 trmFO 1230001..1231308 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  Q3V57_RS05870 xerC 1231725..1232621 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  Q3V57_RS05875 hslV 1232618..1233163 (+) 546 WP_217654605.1 ATP-dependent protease subunit HslV -
  Q3V57_RS05880 hslU 1233229..1234632 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  Q3V57_RS05885 codY 1234657..1235430 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q3V57_RS05890 - 1235481..1235573 (+) 93 WP_031788481.1 hypothetical protein -
  Q3V57_RS05895 rpsB 1235772..1236539 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  Q3V57_RS05900 - 1236573..1236686 (+) 114 WP_001789890.1 hypothetical protein -
  Q3V57_RS05905 tsf 1236721..1237602 (+) 882 WP_000201387.1 translation elongation factor Ts -
  Q3V57_RS05910 pyrH 1237739..1238461 (+) 723 WP_000057330.1 UMP kinase -
  Q3V57_RS05915 frr 1238480..1239034 (+) 555 WP_001280006.1 ribosome recycling factor -
  Q3V57_RS05920 - 1239407..1240177 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=784031 Q3V57_RS05885 WP_000055337.1 1234657..1235430(+) (codY) [Staphylococcus aureus strain SA20-SX]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=784031 Q3V57_RS05885 WP_000055337.1 1234657..1235430(+) (codY) [Staphylococcus aureus strain SA20-SX]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428