Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   PRK60_RS04690 Genome accession   NZ_CP117296
Coordinates   920820..921650 (+) Length   276 a.a.
NCBI ID   WP_102169303.1    Uniprot ID   -
Organism   Limosilactobacillus portuensis strain LV1276_C155     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 915820..926650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PRK60_RS04680 (PRK60_04680) - 916439..918742 (-) 2304 WP_392391047.1 ATP-binding protein -
  PRK60_RS04685 (PRK60_04685) - 918863..920638 (-) 1776 WP_102169302.1 oleate hydratase -
  PRK60_RS04690 (PRK60_04690) endA 920820..921650 (+) 831 WP_102169303.1 DNA/RNA non-specific endonuclease Machinery gene
  PRK60_RS04695 (PRK60_04695) - 921709..923088 (-) 1380 WP_102169304.1 amino acid permease -
  PRK60_RS04700 (PRK60_04700) - 923379..924884 (-) 1506 WP_102169305.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30482.19 Da        Isoelectric Point: 10.5152

>NTDB_id=783612 PRK60_RS04690 WP_102169303.1 920820..921650(+) (endA) [Limosilactobacillus portuensis strain LV1276_C155]
MKLKKRLYHLLFALAGLLVVTGVIQQPQLTNASLNHISKIAYWKKTSHNAQKTLPPTQEQANSVLTPAVRQQLGTSITWN
KAGAFIINNNQTNLNAKIASAPYAVNHLDRQGRAWQGDAWLNRTTRQYKSRIATGNGATDWRPAGFLQAHNLKGGYNHAY
DRGHLLAYALVGGIHGFDASESNPSNIATQTAWANEARSKNSTGQNYYEGLVRKALDQNKQVRYRVTNIYDGNNIVPAGA
HIEAKSSDGSLEYNVFVPNVQRNITINYSTGAVKQN

Nucleotide


Download         Length: 831 bp        

>NTDB_id=783612 PRK60_RS04690 WP_102169303.1 920820..921650(+) (endA) [Limosilactobacillus portuensis strain LV1276_C155]
ATGAAACTTAAGAAACGCCTCTATCACCTTTTATTTGCTCTTGCTGGTTTATTAGTAGTTACTGGAGTTATCCAGCAACC
TCAGCTAACAAATGCTTCGTTAAACCATATTAGTAAAATTGCTTATTGGAAGAAAACCAGTCATAACGCTCAAAAAACAT
TACCGCCAACTCAGGAACAGGCTAATTCAGTCTTAACTCCGGCTGTTCGCCAACAACTTGGCACTTCAATTACCTGGAAC
AAAGCCGGTGCGTTTATTATCAATAATAACCAAACAAATCTTAACGCTAAGATTGCAAGTGCCCCCTATGCTGTAAATCA
TCTTGACCGTCAAGGAAGGGCGTGGCAAGGTGATGCCTGGTTAAACAGGACAACTCGTCAATATAAAAGCCGAATTGCCA
CAGGGAATGGTGCTACGGATTGGCGACCAGCTGGCTTCCTTCAGGCGCATAATCTTAAAGGCGGGTACAATCATGCATAC
GATCGCGGACACCTTCTTGCCTATGCACTAGTTGGTGGTATTCATGGATTTGATGCATCCGAATCAAATCCATCTAATAT
TGCCACGCAAACTGCCTGGGCAAATGAAGCACGAAGTAAGAACTCAACAGGACAAAATTACTACGAAGGTCTGGTGAGAA
AAGCATTAGATCAGAATAAGCAGGTTCGCTACCGAGTTACCAATATTTATGACGGTAATAATATCGTTCCGGCAGGTGCT
CATATCGAAGCTAAATCTAGTGATGGTTCTTTAGAGTATAATGTCTTTGTTCCGAATGTCCAAAGAAACATTACCATCAA
TTATTCAACCGGTGCAGTAAAGCAAAACTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(84-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

57.576

83.696

0.482
  endA Streptococcus pneumoniae D39

57.576

83.696

0.482
  endA Streptococcus pneumoniae R6

57.576

83.696

0.482
  endA Streptococcus pneumoniae TIGR4

57.576

83.696

0.482