Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   PRK59_RS07015 Genome accession   NZ_CP117295
Coordinates   1453747..1454577 (-) Length   276 a.a.
NCBI ID   WP_098045088.1    Uniprot ID   -
Organism   Limosilactobacillus vaginalis strain LV1494_C165     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1448747..1459577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PRK59_RS07005 (PRK59_07005) - 1450503..1452017 (+) 1515 WP_273645291.1 hypothetical protein -
  PRK59_RS07010 (PRK59_07010) - 1452308..1453687 (+) 1380 WP_040531214.1 amino acid permease -
  PRK59_RS07015 (PRK59_07015) endA 1453747..1454577 (-) 831 WP_098045088.1 DNA/RNA non-specific endonuclease Machinery gene
  PRK59_RS07020 (PRK59_07020) - 1454759..1456534 (+) 1776 WP_273645292.1 oleate hydratase -
  PRK59_RS07025 (PRK59_07025) - 1456654..1458969 (+) 2316 WP_382382765.1 ATP-binding protein -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30608.35 Da        Isoelectric Point: 10.5992

>NTDB_id=783600 PRK59_RS07015 WP_098045088.1 1453747..1454577(-) (endA) [Limosilactobacillus vaginalis strain LV1494_C165]
MKFRKRLYHLLFALVGLLIVTGVIQQPKLTSASLNHISKIAYWKKTSHSYQKTLPPTQEQASSVLTPAVRQQLGTAITWN
KAGAFIINNNQTNLNAKIASAPYAVNHLDRQGRAWQGDAWLNRTTRQYKNRTATGNGATNWRPAGFLQAHNLKGGYNHAY
DRGHLLGYALVGGIHGFDASESNPSNIATQTAWANEARNKNSTGQNYYEGLVRKALDQNKQVRYRVTNIYDGNNIVPAGA
HIEAKSSDGSLEYNVFVPNVQRNITINYSTGAVKQN

Nucleotide


Download         Length: 831 bp        

>NTDB_id=783600 PRK59_RS07015 WP_098045088.1 1453747..1454577(-) (endA) [Limosilactobacillus vaginalis strain LV1494_C165]
ATGAAATTTAGAAAACGACTCTATCACCTTTTATTTGCTCTTGTTGGTTTATTAATAGTTACTGGAGTTATCCAGCAGCC
TAAGCTAACGAGTGCTTCATTAAACCATATTAGTAAAATTGCATACTGGAAGAAAACTAGTCACAGCTATCAAAAAACAT
TGCCACCAACTCAGGAACAGGCTAGTTCAGTTTTGACTCCGGCTGTTCGCCAACAACTTGGTACTGCAATTACTTGGAAT
AAAGCTGGTGCATTTATTATTAATAATAACCAAACTAATCTTAACGCTAAGATTGCAAGTGCTCCCTATGCTGTAAATCA
TCTTGACCGCCAAGGAAGAGCCTGGCAAGGTGATGCCTGGTTAAACAGAACAACTCGTCAATATAAAAATCGAACTGCTA
CTGGGAATGGTGCTACGAATTGGCGACCAGCTGGTTTTCTTCAGGCTCATAATCTTAAGGGTGGGTACAATCACGCATAC
GATCGGGGACACCTTCTTGGTTATGCGCTAGTTGGCGGTATTCATGGATTTGATGCATCCGAATCAAATCCATCTAATAT
TGCCACGCAAACTGCCTGGGCAAATGAAGCACGAAATAAAAATTCAACAGGACAAAACTACTATGAAGGTCTGGTCCGAA
AAGCACTAGATCAAAATAAACAAGTTCGCTACCGGGTCACAAATATTTATGACGGTAATAATATTGTTCCGGCTGGTGCT
CACATCGAAGCTAAATCTAGCGATGGCTCTTTAGAATATAATGTTTTTGTGCCAAATGTCCAAAGAAATATTACGATTAA
CTATTCAACTGGCGCAGTAAAGCAAAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(84-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

58.009

83.696

0.486
  endA Streptococcus pneumoniae D39

58.009

83.696

0.486
  endA Streptococcus pneumoniae R6

58.009

83.696

0.486
  endA Streptococcus pneumoniae TIGR4

58.009

83.696

0.486