Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q3V56_RS06145 Genome accession   NZ_CP130518
Coordinates   1266800..1267573 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain SA25-SX     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1261800..1272573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V56_RS06125 trmFO 1262143..1263450 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  Q3V56_RS06130 xerC 1263868..1264764 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  Q3V56_RS06135 hslV 1264761..1265306 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  Q3V56_RS06140 hslU 1265372..1266775 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  Q3V56_RS06145 codY 1266800..1267573 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q3V56_RS06150 - 1267624..1267716 (+) 93 WP_031788481.1 hypothetical protein -
  Q3V56_RS06155 rpsB 1267915..1268682 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  Q3V56_RS06160 - 1268716..1268829 (+) 114 WP_031845108.1 hypothetical protein -
  Q3V56_RS06165 tsf 1268864..1269745 (+) 882 WP_000201386.1 translation elongation factor Ts -
  Q3V56_RS06170 pyrH 1269882..1270604 (+) 723 WP_000057330.1 UMP kinase -
  Q3V56_RS06175 frr 1270623..1271177 (+) 555 WP_001280006.1 ribosome recycling factor -
  Q3V56_RS06180 - 1271550..1272320 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=783575 Q3V56_RS06145 WP_000055337.1 1266800..1267573(+) (codY) [Staphylococcus aureus strain SA25-SX]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=783575 Q3V56_RS06145 WP_000055337.1 1266800..1267573(+) (codY) [Staphylococcus aureus strain SA25-SX]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428