Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q3V64_RS07765 Genome accession   NZ_CP130517
Coordinates   1567748..1568521 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain SA26-SX     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1562748..1573521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V64_RS07730 - 1562997..1563767 (-) 771 WP_000473705.1 isoprenyl transferase -
  Q3V64_RS07735 frr 1564140..1564694 (-) 555 WP_001280006.1 ribosome recycling factor -
  Q3V64_RS07740 pyrH 1564713..1565435 (-) 723 WP_000057330.1 UMP kinase -
  Q3V64_RS07745 tsf 1565572..1566453 (-) 882 WP_000201387.1 translation elongation factor Ts -
  Q3V64_RS07750 - 1566488..1566601 (-) 114 WP_001789890.1 hypothetical protein -
  Q3V64_RS07755 rpsB 1566635..1567402 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  Q3V64_RS07760 - 1567601..1567705 (-) 105 WP_031774985.1 hypothetical protein -
  Q3V64_RS07765 codY 1567748..1568521 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q3V64_RS07770 hslU 1568546..1569949 (-) 1404 WP_000379049.1 ATP-dependent protease ATPase subunit HslU -
  Q3V64_RS07775 hslV 1570015..1570560 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  Q3V64_RS07780 xerC 1570557..1571453 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  Q3V64_RS07785 trmFO 1571870..1573177 (-) 1308 WP_000195260.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=783503 Q3V64_RS07765 WP_000055337.1 1567748..1568521(-) (codY) [Staphylococcus aureus strain SA26-SX]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=783503 Q3V64_RS07765 WP_000055337.1 1567748..1568521(-) (codY) [Staphylococcus aureus strain SA26-SX]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428