Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q3V60_RS06040 Genome accession   NZ_CP130516
Coordinates   1234632..1235405 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain SA27-SX     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1229632..1240405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V60_RS06020 trmFO 1229976..1231283 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  Q3V60_RS06025 xerC 1231700..1232596 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  Q3V60_RS06030 hslV 1232593..1233138 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  Q3V60_RS06035 hslU 1233204..1234607 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  Q3V60_RS06040 codY 1234632..1235405 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q3V60_RS06045 - 1235456..1235548 (+) 93 WP_001790530.1 hypothetical protein -
  Q3V60_RS06050 rpsB 1235747..1236514 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  Q3V60_RS06055 - 1236548..1236661 (+) 114 WP_001789890.1 hypothetical protein -
  Q3V60_RS06060 tsf 1236696..1237577 (+) 882 WP_000201387.1 translation elongation factor Ts -
  Q3V60_RS06065 pyrH 1237714..1238436 (+) 723 WP_000057330.1 UMP kinase -
  Q3V60_RS06070 frr 1238455..1239009 (+) 555 WP_001280006.1 ribosome recycling factor -
  Q3V60_RS06075 - 1239382..1240152 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=783393 Q3V60_RS06040 WP_000055337.1 1234632..1235405(+) (codY) [Staphylococcus aureus strain SA27-SX]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=783393 Q3V60_RS06040 WP_000055337.1 1234632..1235405(+) (codY) [Staphylococcus aureus strain SA27-SX]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTTCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCGCGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428