Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q3V79_RS06150 Genome accession   NZ_CP130513
Coordinates   1259192..1259965 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain SA29-SX     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1254192..1264965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V79_RS06130 trmFO 1254536..1255843 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  Q3V79_RS06135 xerC 1256260..1257156 (+) 897 WP_001015602.1 tyrosine recombinase XerC -
  Q3V79_RS06140 hslV 1257153..1257698 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  Q3V79_RS06145 hslU 1257764..1259167 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  Q3V79_RS06150 codY 1259192..1259965 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q3V79_RS06155 - 1260016..1260108 (+) 93 WP_031788481.1 hypothetical protein -
  Q3V79_RS06160 rpsB 1260307..1261074 (+) 768 WP_303061625.1 30S ribosomal protein S2 -
  Q3V79_RS06165 - 1261108..1261221 (+) 114 WP_001789890.1 hypothetical protein -
  Q3V79_RS06170 tsf 1261256..1262137 (+) 882 WP_000201387.1 translation elongation factor Ts -
  Q3V79_RS06175 pyrH 1262274..1262996 (+) 723 WP_000057330.1 UMP kinase -
  Q3V79_RS06180 frr 1263015..1263569 (+) 555 WP_001280006.1 ribosome recycling factor -
  Q3V79_RS06185 - 1263942..1264712 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=783214 Q3V79_RS06150 WP_000055337.1 1259192..1259965(+) (codY) [Staphylococcus aureus strain SA29-SX]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=783214 Q3V79_RS06150 WP_000055337.1 1259192..1259965(+) (codY) [Staphylococcus aureus strain SA29-SX]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATCCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTTCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428