Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   MGCS36089_RS00820 Genome accession   NZ_CP117284
Coordinates   130554..131507 (+) Length   317 a.a.
NCBI ID   WP_003060701.1    Uniprot ID   A0A9X8T146
Organism   Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 125554..136507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGCS36089_RS00780 (MGCS36089_00318) - 126380..126745 (+) 366 WP_003055257.1 DUF1033 family protein -
  MGCS36089_RS00785 (MGCS36089_00320) comGA/cglA 126826..127767 (+) 942 WP_275926236.1 competence type IV pilus ATPase ComGA Machinery gene
  MGCS36089_RS00790 (MGCS36089_00322) comYB 127703..128734 (+) 1032 WP_084916952.1 competence type IV pilus assembly protein ComGB Machinery gene
  MGCS36089_RS00795 (MGCS36089_00324) comYC 128736..129062 (+) 327 WP_084916953.1 competence type IV pilus major pilin ComGC Machinery gene
  MGCS36089_RS00800 (MGCS36089_00326) comGD 129037..129465 (+) 429 WP_257638821.1 competence type IV pilus minor pilin ComGD -
  MGCS36089_RS00805 (MGCS36089_00328) comGE 129473..129718 (+) 246 WP_049519695.1 competence type IV pilus minor pilin ComGE -
  MGCS36089_RS00810 (MGCS36089_00330) comGF 129699..130139 (+) 441 WP_003061780.1 competence type IV pilus minor pilin ComGF -
  MGCS36089_RS00815 (MGCS36089_00332) comGG 130162..130491 (+) 330 WP_003058539.1 competence type IV pilus minor pilin ComGG -
  MGCS36089_RS00820 (MGCS36089_00334) comYH 130554..131507 (+) 954 WP_003060701.1 class I SAM-dependent methyltransferase Machinery gene
  MGCS36089_RS00825 (MGCS36089_00336) - 131566..132762 (+) 1197 WP_084916957.1 acetate kinase -
  MGCS36089_RS00830 (MGCS36089_00338) - 133069..133275 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  MGCS36089_RS00835 (MGCS36089_00340) - 133378..134058 (+) 681 WP_003060329.1 CPBP family intramembrane glutamic endopeptidase -
  MGCS36089_RS00840 (MGCS36089_00342) - 134076..134513 (+) 438 WP_012766452.1 hypothetical protein -
  MGCS36089_RS00845 (MGCS36089_00344) proC 134652..135428 (-) 777 WP_003058540.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36049.01 Da        Isoelectric Point: 4.7910

>NTDB_id=783127 MGCS36089_RS00820 WP_003060701.1 130554..131507(+) (comYH) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089]
MNFEKIEEAYQLLLENSQLIENDLKTHIYDAIVEQNSFYLGAEGASPQVAQNINKLKALHLTKEEWRRAYQFIFIKAAQT
EQLQANHQFTPDAIGFILLYLLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKKLDYVGIELDDLLIDLSASIAEVMDSS
ARFIQEDAVRPQLLKESDVVISDLPVGYYPNDDIAKRYKVASSEEHTYAHHLLMEQSLKYLKKDGFAIFLAPVNLLTSSQ
SQLLKNWLTGYAQVVALITLPDSIFGHPSNAKSIIVLQKQTDHPMETFVYPIRDLKLAENIHDFMQNFKKWKQDNVN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=783127 MGCS36089_RS00820 WP_003060701.1 130554..131507(+) (comYH) [Streptococcus dysgalactiae subsp. equisimilis strain MGCS36089]
ATGAATTTTGAAAAAATTGAAGAAGCCTATCAGTTACTTTTAGAGAATAGTCAACTGATTGAAAATGATCTAAAAACACA
TATTTATGATGCCATCGTTGAGCAAAACTCTTTTTATTTAGGTGCTGAGGGAGCTAGTCCTCAAGTTGCCCAGAACATTA
ACAAACTGAAAGCCTTACACCTGACTAAAGAAGAATGGCGGAGAGCTTACCAGTTTATTTTTATTAAGGCAGCTCAGACT
GAGCAGCTCCAAGCAAACCATCAGTTCACGCCAGATGCTATTGGTTTCATTCTGCTGTATCTTTTGGAACAATTGAGTGA
CAAAGATAGCCTAGAAGTCCTTGAAATTGGCAGTGGTACGGGAAATCTAGCACAAACTCTCCTCAATAATACGAGTAAGA
AACTTGATTATGTAGGAATTGAACTTGACGACCTCTTAATTGATTTATCAGCAAGTATTGCTGAAGTAATGGACTCTTCA
GCTCGTTTTATTCAAGAAGATGCGGTAAGACCGCAATTGTTAAAAGAAAGCGATGTTGTTATCAGTGACTTGCCAGTGGG
TTATTATCCTAATGATGACATTGCTAAGCGCTATAAGGTAGCTAGTTCTGAGGAACACACCTATGCTCATCATTTACTTA
TGGAACAATCTTTAAAGTATTTGAAAAAAGATGGTTTTGCCATTTTCTTGGCACCTGTCAATTTGTTGACAAGCTCTCAG
AGCCAATTGTTGAAAAATTGGTTAACTGGCTATGCCCAGGTAGTGGCCTTGATTACTCTACCAGATTCTATATTTGGTCA
TCCCTCTAATGCTAAGTCCATTATTGTCTTGCAAAAGCAGACAGACCATCCGATGGAAACCTTTGTTTATCCTATTCGAG
ACTTGAAGCTTGCAGAGAATATTCATGACTTTATGCAAAATTTCAAAAAATGGAAACAGGATAATGTCAATTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

66.456

99.685

0.662
  comYH Streptococcus mutans UA159

66.139

99.685

0.659