Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   PQQ27_RS07705 Genome accession   NZ_CP117238
Coordinates   1568008..1569078 (-) Length   356 a.a.
NCBI ID   WP_000776422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATCC 23235     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1563008..1574078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQQ27_RS07665 (PQQ27_07665) gcvPA 1563185..1564531 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  PQQ27_RS07670 (PQQ27_07670) gcvT 1564551..1565642 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  PQQ27_RS07675 (PQQ27_07675) - 1565801..1566325 (-) 525 WP_001015120.1 shikimate kinase -
  PQQ27_RS07680 (PQQ27_07680) - 1566315..1566461 (-) 147 WP_001792109.1 hypothetical protein -
  PQQ27_RS07685 (PQQ27_07685) comGF 1566558..1567055 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  PQQ27_RS07690 (PQQ27_07690) comGE 1566973..1567272 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  PQQ27_RS07695 (PQQ27_07695) comGD 1567259..1567705 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  PQQ27_RS07700 (PQQ27_07700) comGC 1567683..1567994 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  PQQ27_RS07705 (PQQ27_07705) comGB 1568008..1569078 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  PQQ27_RS07710 (PQQ27_07710) comGA 1569050..1570024 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  PQQ27_RS07715 (PQQ27_07715) - 1570076..1570699 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  PQQ27_RS07720 (PQQ27_07720) - 1570696..1571025 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  PQQ27_RS07725 (PQQ27_07725) - 1571025..1572011 (-) 987 WP_000161311.1 ROK family glucokinase -
  PQQ27_RS07730 (PQQ27_07730) - 1572008..1572211 (-) 204 WP_000087561.1 YqgQ family protein -
  PQQ27_RS07735 (PQQ27_07735) - 1572192..1573655 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41447.84 Da        Isoelectric Point: 10.0606

>NTDB_id=783017 PQQ27_RS07705 WP_000776422.1 1568008..1569078(-) (comGB) [Staphylococcus aureus strain ATCC 23235]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=783017 PQQ27_RS07705 WP_000776422.1 1568008..1569078(-) (comGB) [Staphylococcus aureus strain ATCC 23235]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1