Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   Q3V58_RS05940 Genome accession   NZ_CP130509
Coordinates   1237403..1238176 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain SA32-SX     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1232403..1243176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V58_RS05920 trmFO 1232746..1234053 (+) 1308 WP_303080510.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  Q3V58_RS05925 xerC 1234471..1235367 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  Q3V58_RS05930 hslV 1235364..1235909 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  Q3V58_RS05935 hslU 1235975..1237378 (+) 1404 WP_303080511.1 ATP-dependent protease ATPase subunit HslU -
  Q3V58_RS05940 codY 1237403..1238176 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  Q3V58_RS05945 - 1238227..1238319 (+) 93 WP_031788481.1 hypothetical protein -
  Q3V58_RS05950 rpsB 1238518..1239285 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  Q3V58_RS05955 - 1239319..1239432 (+) 114 WP_031845108.1 hypothetical protein -
  Q3V58_RS05960 tsf 1239467..1240348 (+) 882 WP_000201386.1 translation elongation factor Ts -
  Q3V58_RS05965 pyrH 1240485..1241207 (+) 723 WP_000057330.1 UMP kinase -
  Q3V58_RS05970 frr 1241226..1241780 (+) 555 WP_001280006.1 ribosome recycling factor -
  Q3V58_RS05975 - 1242153..1242923 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=782939 Q3V58_RS05940 WP_000055337.1 1237403..1238176(+) (codY) [Staphylococcus aureus strain SA32-SX]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=782939 Q3V58_RS05940 WP_000055337.1 1237403..1238176(+) (codY) [Staphylococcus aureus strain SA32-SX]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428