Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PO767_RS08490 Genome accession   NZ_CP117182
Coordinates   1669789..1670568 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain Lwp6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1664789..1675568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO767_RS08470 trmFO 1665476..1666783 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PO767_RS08475 xerC 1666853..1667770 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  PO767_RS08480 hslV 1667786..1668331 (+) 546 WP_022553348.1 ATP-dependent protease subunit HslV -
  PO767_RS08485 hslU 1668339..1669751 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  PO767_RS08490 codY 1669789..1670568 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PO767_RS08495 flgB 1670922..1671311 (+) 390 WP_089072433.1 flagellar basal body rod protein FlgB -
  PO767_RS08500 flgC 1671311..1671763 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  PO767_RS08505 fliE 1671774..1672094 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  PO767_RS08510 fliF 1672137..1673747 (+) 1611 WP_022553346.1 flagellar basal-body MS-ring/collar protein FliF -
  PO767_RS08515 fliG 1673760..1674776 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  PO767_RS08520 fliH 1674769..1675524 (+) 756 WP_022553345.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=782598 PO767_RS08490 WP_003154263.1 1669789..1670568(+) (codY) [Bacillus velezensis strain Lwp6]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=782598 PO767_RS08490 WP_003154263.1 1669789..1670568(+) (codY) [Bacillus velezensis strain Lwp6]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACA
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471