Detailed information    

insolico Bioinformatically predicted

Overview


Name   scnK   Type   Regulator
Locus tag   PO908_RS05300 Genome accession   NZ_CP117042
Coordinates   1007068..1008378 (-) Length   436 a.a.
NCBI ID   WP_021001669.1    Uniprot ID   A0AAP6BNP2
Organism   Streptococcus anginosus strain CGMH_KH1     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 1002068..1013378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO908_RS05280 (PO908_05260) - 1002287..1003531 (-) 1245 WP_003024605.1 NAD(P)H-dependent oxidoreductase -
  PO908_RS05285 (PO908_05265) - 1003550..1004158 (-) 609 WP_003024603.1 NADPH-dependent FMN reductase -
  PO908_RS05290 (PO908_05270) - 1004178..1005107 (-) 930 WP_021001667.1 FAD:protein FMN transferase -
  PO908_RS05295 (PO908_05275) nox 1005398..1006771 (+) 1374 WP_021001668.1 H2O-forming NADH oxidase -
  PO908_RS05300 (PO908_05280) scnK 1007068..1008378 (-) 1311 WP_021001669.1 sensor histidine kinase KdpD Regulator
  PO908_RS05305 (PO908_05285) scnR 1008379..1009068 (-) 690 WP_003024592.1 response regulator transcription factor Regulator
  PO908_RS05310 (PO908_05290) - 1009240..1010148 (+) 909 WP_021001670.1 ABC transporter ATP-binding protein -
  PO908_RS05315 (PO908_05295) - 1010148..1010888 (+) 741 WP_003024586.1 ABC transporter permease -
  PO908_RS05320 (PO908_05300) - 1010885..1011613 (+) 729 WP_003024584.1 ABC transporter permease -

Sequence


Protein


Download         Length: 436 a.a.        Molecular weight: 50020.82 Da        Isoelectric Point: 8.2547

>NTDB_id=782254 PO908_RS05300 WP_021001669.1 1007068..1008378(-) (scnK) [Streptococcus anginosus strain CGMH_KH1]
MDTVKFFTKLLTRYVLLLLALIIGLVFVYGLVFSSYFSFYGKEKPELLYTKIAQSSQQNNFNFDKSSKIEMDKQNTWAMV
LNQDGNIVQSYHLPQQLKRHYTNADMVKFSRWYLEDYPVFSYVRGQQILVLGYPKKHSLAKFNFYANTQFIRNFLSLGLV
FLGIILLLIFILLSRSKLRIKKEMDPIITAVTSLSQGQNIALNEKGNFSEIKTALNETSHILEESNTMKEQWIRGVSHDL
RNPLMLISGYNSQLEQQYGKGKQTEEIENQIQTMKEMISNLNMSYLLDNQKHHSEFSSLDLVAVLRTVIADILNNYETIT
LHFDLPTEAVLVKGEVTLLERAFRNLLLNSIIHSGSNQIDLTYQLSDNKVLIIIADQGDITAQKITELNQKSTNYESHGM
GTVITKQIIKLHQGEIVFLDNQPGLKVIISLPLVKD

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=782254 PO908_RS05300 WP_021001669.1 1007068..1008378(-) (scnK) [Streptococcus anginosus strain CGMH_KH1]
ATGGATACCGTTAAATTTTTTACTAAGTTATTAACCAGGTATGTTCTATTACTCTTGGCTTTAATCATAGGACTTGTTTT
TGTTTATGGTTTGGTTTTCTCATCCTATTTTAGTTTCTATGGAAAGGAAAAACCGGAACTACTTTACACTAAAATCGCTC
AATCGAGTCAACAGAATAATTTTAATTTTGATAAAAGCAGCAAAATTGAAATGGATAAACAAAATACTTGGGCTATGGTA
CTGAATCAAGATGGCAATATTGTCCAATCTTATCATTTACCTCAACAGCTCAAAAGACATTATACCAATGCTGATATGGT
TAAATTTTCACGTTGGTATTTAGAAGATTACCCTGTTTTCTCCTATGTACGAGGTCAGCAAATTTTAGTTTTGGGCTATC
CTAAAAAGCATTCCTTAGCAAAATTTAATTTCTATGCTAATACACAATTTATTAGGAATTTTCTCAGTTTGGGACTTGTT
TTCTTGGGTATTATTCTTTTACTTATTTTTATTCTTTTGAGCCGATCAAAGCTACGCATTAAAAAGGAAATGGATCCGAT
TATTACTGCTGTCACTTCTTTGTCTCAGGGTCAAAATATTGCTCTTAATGAAAAGGGAAATTTCTCAGAAATTAAGACAG
CCCTTAATGAAACATCTCATATTTTGGAAGAAAGCAACACGATGAAAGAGCAATGGATTAGAGGGGTCAGTCATGATTTA
CGCAATCCTCTTATGCTCATATCAGGTTATAACAGTCAGCTAGAGCAGCAATATGGTAAAGGAAAGCAGACGGAGGAAAT
TGAAAATCAGATTCAAACTATGAAAGAAATGATTTCTAATCTCAATATGAGCTACTTATTGGATAATCAAAAGCATCACT
CCGAATTTTCGAGTCTTGATTTGGTTGCAGTCCTACGAACAGTAATTGCCGATATATTGAATAATTATGAAACAATTACA
CTTCATTTTGATTTGCCTACCGAGGCAGTGTTGGTAAAAGGAGAGGTAACTTTACTAGAAAGAGCTTTTAGAAATCTCTT
GCTTAATAGTATCATACACAGCGGTTCTAACCAGATTGATCTGACTTATCAATTATCTGATAATAAAGTGCTCATCATCA
TTGCGGATCAAGGAGATATTACAGCTCAAAAAATTACTGAGCTAAATCAAAAATCGACTAATTATGAATCACATGGTATG
GGAACGGTTATCACTAAACAAATTATTAAATTACATCAAGGTGAAATTGTTTTTTTAGACAATCAGCCAGGCTTAAAAGT
CATCATTTCTTTACCTTTAGTAAAGGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnK Streptococcus mutans UA159

83.486

100

0.835