Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   PO908_RS04040 Genome accession   NZ_CP117042
Coordinates   744545..745390 (+) Length   281 a.a.
NCBI ID   WP_330945025.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CGMH_KH1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 739545..750390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO908_RS04010 (PO908_03990) - 739874..740752 (+) 879 WP_106083249.1 F0F1 ATP synthase subunit gamma -
  PO908_RS04015 (PO908_03995) atpD 740787..742193 (+) 1407 WP_003030503.1 F0F1 ATP synthase subunit beta -
  PO908_RS04020 (PO908_04000) - 742204..742623 (+) 420 WP_003025266.1 F0F1 ATP synthase subunit epsilon -
  PO908_RS04025 (PO908_04005) - 742728..742958 (+) 231 WP_022526685.1 DUF1146 family protein -
  PO908_RS04030 (PO908_04010) murA 742997..744277 (+) 1281 WP_003030496.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  PO908_RS04035 (PO908_04015) - 744270..744446 (+) 177 WP_003030460.1 DNA-directed RNA polymerase subunit beta -
  PO908_RS04040 (PO908_04020) endA 744545..745390 (+) 846 WP_330945025.1 DNA/RNA non-specific endonuclease Machinery gene
  PO908_RS04045 (PO908_04025) - 745531..747267 (+) 1737 WP_394468108.1 ABC transporter ATP-binding protein -
  PO908_RS04050 (PO908_04030) - 747281..749053 (+) 1773 WP_394468109.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 30604.26 Da        Isoelectric Point: 10.4147

>NTDB_id=782246 PO908_RS04040 WP_330945025.1 744545..745390(+) (endA) [Streptococcus anginosus strain CGMH_KH1]
MARKKSNQKVAQSVAGLVIALVLALGGYSFSNHHGSTKPSDSTAINRSIRTNHAAPSQELAQSVLTESVKRQLKGKIEWN
GAGAFTINENKTTLDAKVASVPYADNKTKLVQGQTVPTVANALLSKTTRQYRSREETGNGSTTWTPAGWHQVKHLSGEYN
HAVDRGHLLGYALIGNLKGFDASTSNPKNIAVQTAWANQANTSHSTGQNFYETKVRKALDKNKRVRYRVTLIYANEQDLV
PVGSHIEAKSSDSSLEMNVFVPNVQTGLRLNYQTGEVTVTN

Nucleotide


Download         Length: 846 bp        

>NTDB_id=782246 PO908_RS04040 WP_330945025.1 744545..745390(+) (endA) [Streptococcus anginosus strain CGMH_KH1]
ATGGCGAGAAAGAAATCCAATCAGAAAGTAGCACAAAGTGTAGCTGGTTTGGTTATAGCACTGGTTCTTGCGCTGGGAGG
TTATTCTTTTAGCAATCATCATGGTAGTACGAAGCCTTCTGACAGCACTGCTATTAATCGAAGTATTCGGACGAATCATG
CAGCACCCAGTCAAGAATTAGCACAGAGTGTTTTGACAGAGTCCGTTAAACGGCAACTCAAAGGAAAGATTGAATGGAAT
GGGGCAGGAGCCTTCACAATCAATGAAAATAAAACAACATTGGATGCTAAAGTTGCAAGCGTTCCTTATGCGGATAATAA
GACTAAACTCGTCCAAGGTCAGACAGTTCCGACGGTTGCAAATGCTCTTTTATCCAAAACAACTCGCCAATATAGAAGTC
GTGAAGAAACAGGAAATGGCTCCACGACTTGGACACCTGCTGGTTGGCATCAAGTCAAGCATTTATCAGGTGAATACAAC
CATGCAGTTGACCGAGGACATTTGTTGGGTTATGCTTTGATTGGTAACTTGAAAGGGTTTGATGCTTCGACCAGTAACCC
GAAAAATATAGCTGTGCAAACAGCTTGGGCTAATCAAGCAAATACTAGTCATTCTACGGGTCAAAATTTCTATGAAACAA
AGGTTCGCAAGGCACTAGACAAAAATAAACGAGTTCGGTATCGAGTGACTTTGATTTATGCCAATGAACAGGATTTAGTG
CCAGTTGGTTCGCATATTGAAGCTAAATCAAGCGATAGTAGCTTGGAAATGAATGTCTTTGTTCCCAACGTACAGACAGG
ACTTCGGCTAAATTATCAAACAGGAGAAGTGACCGTTACCAACTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

76.549

80.427

0.616
  endA Streptococcus pneumoniae D39

76.549

80.427

0.616
  endA Streptococcus pneumoniae R6

76.549

80.427

0.616
  endA Streptococcus pneumoniae TIGR4

76.549

80.427

0.616