Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   Q3V23_RS13175 Genome accession   NZ_CP130487
Coordinates   3013249..3015477 (-) Length   742 a.a.
NCBI ID   WP_302860750.1    Uniprot ID   -
Organism   Streptomyces sp. VNUA116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3008249..3020477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V23_RS13155 (Q3V23_13155) - 3009351..3010373 (+) 1023 WP_302860745.1 Gfo/Idh/MocA family oxidoreductase -
  Q3V23_RS13160 (Q3V23_13160) - 3010599..3010805 (+) 207 WP_302860746.1 AlpA family transcriptional regulator -
  Q3V23_RS13165 (Q3V23_13165) - 3010955..3011185 (+) 231 WP_302860747.1 heavy-metal-associated domain-containing protein -
  Q3V23_RS13170 (Q3V23_13170) - 3011697..3012983 (-) 1287 WP_106681404.1 citrate synthase -
  Q3V23_RS13175 (Q3V23_13175) recD/recD2/recDB 3013249..3015477 (-) 2229 WP_302860750.1 ATP-dependent RecD-like DNA helicase Machinery gene
  Q3V23_RS13180 (Q3V23_13180) - 3015699..3016583 (-) 885 WP_302860752.1 sugar phosphate isomerase/epimerase -
  Q3V23_RS13185 (Q3V23_13185) - 3016580..3017731 (-) 1152 WP_302860754.1 dihydrodipicolinate synthase family protein -
  Q3V23_RS13190 (Q3V23_13190) - 3017728..3018873 (-) 1146 WP_302860755.1 Gfo/Idh/MocA family protein -
  Q3V23_RS13195 (Q3V23_13195) - 3018938..3019720 (+) 783 Protein_2616 sugar phosphate isomerase/epimerase family protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 79485.70 Da        Isoelectric Point: 6.9340

>NTDB_id=782244 Q3V23_RS13175 WP_302860750.1 3013249..3015477(-) (recD/recD2/recDB) [Streptomyces sp. VNUA116]
MVQMAVVEGVLERITYANEESGYTVARVDTGRGGGDLLTVVGSLLGAQPGESLRLEGRWGSHPQYGRQFTVENYTTVLPA
TVQGIRRYLGSGLIKGIGPRIADRITEHFGTDTLDVIESDPGRLIEVPGLGPKRTKLIGAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYGDASISVTRNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCYLPEERL
IADAVKLLQVDTGLVIDCLAELAAQEEGAGGEGAAGVVREKVPGSEDGQPVTAVYLVPFHRAELSLAGQLKRLLGDGADR
LAAFQDVDWDRALTWLAGRTGAQLAPEQREAVRLALSSKVAVLTGGPGCGKSFTVRSVVELARAKGAKVVLAAPTGRAAK
RLSELTGAEASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLLVGDVDQLPSVGAGE
VLRDLLAPGSPVPAVRLTRIFRQAQQSGVVTNAHRINSGAQPITQGMTDFFLFAEEDTEEAGRLTVDVAARRIPAKFGLD
PRRDVQVLAPMHRGPAGAGTLNGLLQQAITPARPDLPERRFGGRVFRVGDKVTQVRNNYEKGQNGVFNGTVGVVTGLDVV
EQRLTVRTDEDEEVGYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKRLVVLVGSRKAL
GQAVRTVSAGRRCTALDHRLGM

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=782244 Q3V23_RS13175 WP_302860750.1 3013249..3015477(-) (recD/recD2/recDB) [Streptomyces sp. VNUA116]
ATGGTCCAGATGGCAGTCGTCGAAGGTGTCCTGGAGCGGATCACCTACGCCAACGAGGAGAGCGGCTATACGGTCGCGCG
CGTCGACACCGGCCGCGGCGGCGGCGACCTCCTCACGGTGGTCGGCTCGCTCCTCGGCGCGCAGCCGGGGGAGTCGCTGC
GGCTGGAGGGCCGCTGGGGCTCCCACCCGCAGTACGGACGGCAGTTCACCGTCGAGAACTACACCACGGTCCTGCCCGCC
ACCGTCCAGGGCATCCGCCGCTATCTCGGCTCCGGCCTGATCAAGGGCATCGGCCCGCGCATCGCCGACCGCATCACCGA
GCACTTCGGCACGGACACCCTCGACGTCATCGAGAGCGACCCCGGCCGCCTCATCGAGGTCCCCGGCCTCGGCCCGAAGC
GCACCAAGCTGATCGGCGCCGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAGGGCGTCGGCGTC
TCCACCTCCATCGCCGTGCGCATCTACAAGAAGTACGGGGACGCCTCCATCTCCGTCACCCGCAACCAGCCCTACCGGCT
GGCGGCCGACGTGTGGGGCATCGGCTTCCTCACCGCCGACCGCATCGCCCAGGCCGTCGGCATCCCGCACGACAGCCCCG
AGCGGGTCAAGGCCGGGCTGCAGTACGCCCTTTCCCAGTCCACCGACCAGGGCCACTGCTACCTCCCCGAGGAGCGGCTG
ATCGCCGATGCCGTGAAGCTCCTCCAGGTGGACACCGGCCTTGTCATCGACTGCCTCGCCGAGCTGGCGGCTCAGGAAGA
GGGGGCGGGCGGGGAAGGGGCCGCGGGCGTGGTCCGCGAGAAGGTCCCCGGCAGCGAGGACGGGCAGCCCGTCACCGCCG
TCTACCTCGTCCCCTTCCACCGCGCCGAACTCTCCCTGGCCGGGCAGCTGAAGCGGCTGCTCGGCGACGGCGCCGACCGG
CTCGCCGCCTTCCAGGACGTCGACTGGGACCGGGCCCTGACCTGGCTCGCGGGCCGCACGGGCGCGCAGCTCGCTCCCGA
GCAGCGCGAGGCGGTCCGGCTCGCGCTCTCCAGCAAGGTCGCCGTGCTCACCGGCGGGCCGGGCTGCGGCAAGTCCTTCA
CCGTCCGCTCCGTGGTCGAACTGGCCCGCGCCAAGGGGGCCAAGGTGGTCCTCGCGGCCCCCACCGGGCGGGCCGCCAAG
CGGCTCTCCGAGCTCACGGGCGCCGAGGCCTCCACCGTCCACCGGCTCCTGGAGCTCAAGCCCGGCGGCGACGCCGCGTA
CGACAAGGACCGCCCCCTCGACGCCGACCTGGTCGTCGTGGACGAGGCGTCCATGCTCGACCTGCTGCTGGCCAACAAGC
TCGTCAAGGCCGTGCCCCCGGGCGCCCACCTGCTCCTCGTCGGCGACGTGGACCAACTGCCCTCCGTGGGCGCCGGGGAG
GTGCTGCGCGACCTCCTCGCCCCCGGCAGCCCCGTCCCCGCCGTCCGGCTCACCCGCATCTTCCGGCAGGCGCAGCAGTC
CGGCGTGGTCACCAATGCACACCGCATCAACTCCGGGGCACAGCCCATCACTCAGGGGATGACGGATTTCTTCCTCTTCG
CCGAGGAGGACACGGAGGAGGCCGGCCGGCTCACCGTGGACGTGGCGGCGCGCCGCATCCCCGCCAAGTTCGGGCTCGAC
CCCCGCCGGGACGTCCAGGTGCTGGCGCCGATGCACCGCGGCCCCGCCGGGGCCGGCACCCTCAACGGGCTGCTGCAGCA
GGCGATCACGCCCGCCCGGCCCGACCTGCCCGAGCGCCGCTTCGGCGGCCGGGTCTTCCGCGTCGGCGACAAGGTCACCC
AGGTGCGCAACAACTATGAAAAGGGGCAGAACGGTGTTTTCAATGGCACGGTGGGCGTCGTCACCGGCCTCGACGTCGTC
GAGCAGCGGCTCACCGTGCGCACCGACGAGGACGAGGAAGTGGGCTATGACTTCGACGAACTCGACGAGCTCGCGCACGC
CTACGCGGTGACGATCCACCGCTCGCAGGGCAGCGAATACCCGGCCGTGGTGATCCCCGTCACCACCGGCGCGTGGATGA
TGCTGCAGCGCAATCTGCTCTATACCGCAGTAACGCGGGCAAAGCGGCTGGTGGTGCTGGTGGGCTCGCGGAAGGCGCTC
GGGCAGGCCGTGCGGACCGTCTCCGCAGGCAGGAGGTGCACCGCGCTCGATCACCGGCTGGGAATGTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(666-714)

Helix-hairpin-helix domain (HHH_5)

(94-138)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

AAA domain (AAA_30)

(343-522)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(581-647)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.733

100

0.368