Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LYZ37_RS00445 Genome accession   NZ_CP117029
Coordinates   92742..93443 (+) Length   233 a.a.
NCBI ID   WP_272786063.1    Uniprot ID   -
Organism   Vibrio tubiashii strain FP17     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 87742..98443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ37_RS00430 (LYZ37_00430) - 88879..91203 (+) 2325 WP_272786060.1 Tex family protein -
  LYZ37_RS00435 (LYZ37_00435) - 91296..91766 (-) 471 WP_272786061.1 ATP-dependent Lon protease -
  LYZ37_RS00440 (LYZ37_00440) bioH 91888..92682 (-) 795 WP_272786062.1 pimeloyl-ACP methyl ester esterase BioH -
  LYZ37_RS00445 (LYZ37_00445) comF 92742..93443 (+) 702 WP_272786063.1 phosphoribosyltransferase family protein Machinery gene
  LYZ37_RS00450 (LYZ37_00450) nfuA 93530..94117 (+) 588 WP_054962683.1 Fe-S biogenesis protein NfuA -
  LYZ37_RS00455 (LYZ37_00455) nudE 94289..94834 (+) 546 WP_272786065.1 ADP compounds hydrolase NudE -
  LYZ37_RS00460 (LYZ37_00460) cysQ 94895..95722 (+) 828 WP_239826863.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LYZ37_RS00465 (LYZ37_00465) recG 95957..98035 (-) 2079 WP_272786066.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26438.96 Da        Isoelectric Point: 8.7989

>NTDB_id=782092 LYZ37_RS00445 WP_272786063.1 92742..93443(+) (comF) [Vibrio tubiashii strain FP17]
MLTQKVVKHIADLLPMHCEVCHLALAKPHPPSGICGHCSRYFAPVPRCQRCGLPTPFDIAECGECLKHPPKWQRLYCVAD
YQPPLAQYVHRLKYERQFWQASKLASLLAPRIETPAQIITFVPLHWGRYLRRGFNQSELIARSLARQLNVSCQPLFKRVR
ATPQQQGLTKLERKRNLDRAFLLNGEIVADHIAIVDDVLTTGSTVQHLCELLLEAGVKSVDIYCICRTPEPAS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=782092 LYZ37_RS00445 WP_272786063.1 92742..93443(+) (comF) [Vibrio tubiashii strain FP17]
ATGTTAACTCAAAAGGTAGTGAAACACATCGCCGACCTGTTGCCGATGCATTGCGAGGTTTGCCATCTCGCGCTGGCCAA
GCCACATCCACCTAGTGGTATTTGCGGTCATTGCTCGCGCTACTTCGCGCCTGTTCCTCGATGCCAGCGCTGCGGTTTAC
CCACTCCTTTTGATATAGCAGAGTGCGGAGAATGTCTTAAACATCCGCCTAAATGGCAGCGGCTCTATTGTGTTGCTGAC
TATCAACCACCACTTGCGCAATATGTTCATAGGCTTAAGTACGAACGGCAATTTTGGCAGGCGAGTAAGCTCGCGAGCCT
GCTCGCCCCGAGAATAGAAACGCCCGCACAGATCATCACTTTTGTGCCCTTGCACTGGGGGCGATATCTAAGGCGCGGAT
TTAATCAGAGTGAGTTGATAGCACGTTCACTCGCACGTCAACTCAACGTATCGTGTCAGCCCTTGTTCAAAAGAGTGAGA
GCAACACCTCAGCAGCAAGGTTTAACTAAGTTGGAACGAAAGCGAAATCTAGACCGTGCTTTCTTACTCAATGGAGAGAT
TGTTGCTGACCATATCGCGATTGTTGATGATGTTCTCACTACAGGTAGTACGGTGCAGCATTTATGTGAATTACTGCTTG
AAGCGGGGGTGAAAAGCGTTGATATTTACTGCATCTGCCGTACTCCTGAGCCAGCAAGTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.172

99.571

0.549
  comF Vibrio campbellii strain DS40M4

46.667

100

0.481