Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   PPK11_RS05300 Genome accession   NZ_CP117024
Coordinates   1122049..1122330 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain 444A6     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1117049..1127330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPK11_RS05280 - 1117762..1119102 (-) 1341 WP_273896247.1 COG3014 family protein -
  PPK11_RS05290 comB4 1119421..1121784 (-) 2364 WP_273896250.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  PPK11_RS05295 comB3 1121786..1122049 (-) 264 WP_273896252.1 competence protein ComB Machinery gene
  PPK11_RS05300 comB2 1122049..1122330 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  PPK11_RS05305 - 1122476..1123303 (-) 828 WP_273896348.1 DUF5718 family protein -
  PPK11_RS05310 - 1123393..1124445 (-) 1053 WP_273896349.1 MnmA/TRMU family protein -
  PPK11_RS05315 dnaG 1124442..1126121 (-) 1680 WP_273896350.1 DNA primase -
  PPK11_RS05320 groES 1126409..1126765 (+) 357 WP_000671949.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=782078 PPK11_RS05300 WP_001272686.1 1122049..1122330(-) (comB2) [Helicobacter pylori strain 444A6]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=782078 PPK11_RS05300 WP_001272686.1 1122049..1122330(-) (comB2) [Helicobacter pylori strain 444A6]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGCTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989