Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   Q2B68_RS14695 Genome accession   NZ_CP130280
Coordinates   2964334..2966691 (-) Length   785 a.a.
NCBI ID   WP_015387880.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PM415     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2959334..2971691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS14665 (Q2B68_14665) - 2959836..2960615 (-) 780 WP_003152548.1 enoyl-CoA hydratase -
  Q2B68_RS14670 (Q2B68_14670) - 2960629..2961213 (-) 585 WP_014470798.1 TetR/AcrR family transcriptional regulator -
  Q2B68_RS14675 (Q2B68_14675) - 2961302..2962990 (-) 1689 WP_302564967.1 AMP-binding protein -
  Q2B68_RS14680 (Q2B68_14680) - 2963096..2963656 (+) 561 WP_003152543.1 DUF2711 family protein -
  Q2B68_RS14685 (Q2B68_14685) - 2963643..2963774 (+) 132 WP_231135842.1 DUF2711 family protein -
  Q2B68_RS14690 (Q2B68_14690) - 2963913..2964317 (-) 405 WP_003152541.1 DUF350 domain-containing protein -
  Q2B68_RS14695 (Q2B68_14695) mutS/mutS2 2964334..2966691 (-) 2358 WP_015387880.1 endonuclease MutS2 Machinery gene
  Q2B68_RS14700 (Q2B68_14700) polX 2966712..2968424 (-) 1713 WP_302564968.1 DNA polymerase/3'-5' exonuclease PolX -
  Q2B68_RS14705 (Q2B68_14705) - 2968530..2969063 (-) 534 WP_003152534.1 CvpA family protein -
  Q2B68_RS14710 (Q2B68_14710) zapA 2969071..2969328 (-) 258 WP_003152533.1 cell division protein ZapA -
  Q2B68_RS14715 (Q2B68_14715) rnhC 2969462..2970403 (+) 942 WP_003152532.1 ribonuclease HIII -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87318.66 Da        Isoelectric Point: 6.4184

>NTDB_id=781805 Q2B68_RS14695 WP_015387880.1 2964334..2966691(-) (mutS/mutS2) [Bacillus amyloliquefaciens strain PM415]
MQQKVLSSLEFHKVKEQITAHAASSLGREKLLQLKPLTDLADIQKQLDEVEEASAVMRLRGHAPFGGLTDIRSALRRAEI
GSVLTPAEFTELSGLLYAVKQMKHFISQMTEDGVGIPLIQAHAEELITLGDLEREINSCIDDHGEVLDHASPALRGIRTQ
LRTLESRVRDRLESMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDMNNSLQQA
KVKEKQEIERILRMLTEHTAEHTQEIAQNVEVLQTLDFIFAKARYAKAMKATKPFMNGDGFIRLKKARHPLLPQDQVVAN
DIELGGDYSTIVITGPNTGGKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDNVFADIGDEQSIEQSLSTFSSHMVNIV
NILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARVLATTHYPELKAYGYNRQGVMNASVEFDIETLSPTYK
LLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAEHNEVDLMIASLEKSKKRADEELSETESLRKEAEKLHKELQQQIIE
LNAQKDKMMEEAERKAAEKLEAAANEAEQIIRELRSIKQEHRSFKEHELIDAKKRLGDAMPAFEKSKQPERKTEKKRELK
PGDEVKVLTFGQKGALLEKTGEKEWNVQIGILKMKVKEKDLEFLKSAPEPKKEKAITAVKGKDYHVSLELDLRGERYENA
LSRVEKYLDDAVLAGYPRVSIIHGKGTGALRKGVQDLLKNHRSVKSSRFGEAGEGGSGVTIVELK

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=781805 Q2B68_RS14695 WP_015387880.1 2964334..2966691(-) (mutS/mutS2) [Bacillus amyloliquefaciens strain PM415]
GTGCAGCAAAAAGTGTTATCATCACTTGAATTTCATAAAGTAAAAGAACAGATTACCGCACATGCCGCCTCATCGCTCGG
CAGGGAGAAGCTTCTGCAGCTGAAACCTTTGACGGATCTCGCCGACATCCAAAAACAGCTGGATGAAGTCGAAGAAGCAT
CCGCGGTTATGCGCTTGAGAGGCCATGCTCCGTTCGGCGGCCTGACCGACATAAGATCCGCTTTACGGCGGGCGGAAATC
GGCAGTGTGCTGACGCCGGCGGAATTCACCGAATTGTCCGGGCTGCTGTATGCCGTTAAACAAATGAAGCATTTTATCAG
CCAAATGACAGAAGACGGCGTCGGCATTCCGCTGATACAGGCCCATGCAGAAGAGCTGATTACATTAGGCGATTTGGAAA
GGGAGATTAACTCCTGCATTGATGACCATGGTGAAGTGCTTGATCATGCGTCTCCCGCTTTAAGGGGAATCCGCACGCAG
CTCAGGACGCTTGAATCAAGAGTCAGAGACCGGCTTGAATCGATGCTGCGTTCATCTTCCGCTTCTAAAATGCTGTCTGA
CACCATCGTTACGATTCGGAATGACCGCTTTGTCATCCCGGTCAAACAGGAATACAGATCAAGCTACGGCGGAATTGTCC
ACGATACATCTTCATCCGGTGCGACACTGTTTATTGAACCGCAGGCGATCGTAGATATGAACAACTCGCTTCAGCAGGCG
AAAGTAAAAGAAAAACAGGAAATCGAACGGATTCTCCGGATGCTGACGGAGCATACGGCTGAACACACACAAGAAATCGC
TCAAAATGTGGAAGTGCTGCAGACACTGGATTTCATTTTCGCCAAGGCGAGATACGCAAAAGCAATGAAGGCGACAAAAC
CATTCATGAACGGAGACGGCTTTATCCGTCTGAAAAAAGCGCGCCATCCGCTGCTGCCCCAAGATCAAGTCGTGGCCAAC
GATATTGAACTGGGCGGAGATTATTCAACGATCGTCATCACGGGACCGAATACGGGCGGTAAAACCGTTACGTTAAAAAC
ACTCGGGCTGCTGACGATAATGGCGCAGGCAGGATTGCACATACCGGCTGACGAGGGCTCGGAAGCAGCCGTATTTGACA
ATGTGTTTGCCGATATCGGCGATGAACAGTCGATCGAACAAAGTCTGAGTACGTTCTCATCTCACATGGTCAATATCGTC
AATATTTTAAAAGACGTGTCTGAAAACAGTCTTGTGCTGTTTGACGAACTCGGTGCCGGAACAGATCCGCAGGAAGGGGC
GGCGCTTGCCATGAGCATCCTTGACGAAGTTCACCGGACAAACGCCAGAGTGCTTGCGACAACCCATTATCCGGAACTGA
AAGCATACGGATATAACAGACAAGGCGTCATGAATGCCAGCGTTGAATTTGACATTGAAACGCTTTCGCCTACCTATAAA
CTTCTGATCGGAGTGCCGGGCCGAAGCAACGCATTTGAAATCTCAAGACGCCTTGGGCTTCCGGAGCATATCATCGGCCA
GGCGAAGTCAGAAATGACCGCCGAACATAACGAAGTCGATCTGATGATCGCATCGCTTGAAAAAAGCAAAAAAAGAGCGG
ATGAAGAGCTTTCTGAAACCGAATCACTCAGAAAAGAAGCAGAAAAACTGCACAAAGAGCTTCAGCAGCAAATCATTGAA
CTGAACGCCCAAAAAGATAAAATGATGGAAGAAGCCGAGCGGAAAGCTGCGGAAAAACTGGAAGCCGCCGCAAATGAAGC
CGAACAGATTATCCGCGAGCTCAGGTCCATCAAGCAAGAACACAGATCCTTTAAGGAACACGAGCTGATTGACGCCAAAA
AACGTCTCGGAGACGCGATGCCGGCTTTTGAAAAATCAAAGCAGCCGGAAAGAAAAACAGAGAAAAAACGCGAGCTGAAG
CCGGGCGACGAAGTAAAGGTGCTCACATTCGGACAAAAAGGGGCGCTGCTTGAAAAAACCGGTGAGAAAGAATGGAACGT
CCAAATCGGCATCCTTAAAATGAAGGTGAAGGAAAAAGATCTTGAGTTTCTCAAATCGGCTCCTGAACCGAAAAAAGAAA
AAGCAATCACCGCCGTAAAAGGGAAGGATTATCACGTATCCCTTGAACTTGACCTCAGGGGAGAGCGTTACGAAAACGCC
CTCAGCCGCGTCGAAAAATATTTAGATGACGCGGTGCTCGCCGGCTATCCGAGAGTGTCCATCATTCACGGAAAAGGCAC
GGGCGCCCTCCGAAAAGGGGTGCAGGATCTTCTGAAAAACCACCGCAGCGTGAAAAGCTCGCGGTTCGGGGAAGCGGGAG
AAGGAGGATCAGGCGTAACGATTGTCGAACTAAAATAA

Domains

Predicted by InterProScan.

MutS domain V (MutS_V)

(331-512)

Smr domain (Smr)

(710-785)

MutS2 and Smr-associated SH3 domain (MSSS)

(641-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

87.389

100

0.874